Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003669A_C01 KMC003669A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187685.1| glycosyl hydrolase family 51; protein id: At3g1... 143 1e-33
gb|AAK50089.1|AF372949_1 AT3g10740/T7M13_18 [Arabidopsis thalian... 143 1e-33
dbj|BAC10349.1| putative arabinoxylan narabinofuranohydrolase is... 115 4e-25
gb|AAK21880.1|AF320325_1 arabinoxylan arabinofuranohydrolase iso... 111 6e-24
gb|AAL18931.1|AF429985_1 arabinosidase ARA-1 [Lycopersicon escul... 109 3e-23
>ref|NP_187685.1| glycosyl hydrolase family 51; protein id: At3g10740.1, supported by
cDNA: gi_13937190 [Arabidopsis thaliana]
gi|6630556|gb|AAF19575.1|AC011708_18 putative
alpha-L-arabinofuranosidase [Arabidopsis thaliana]
Length = 678
Score = 143 bits (361), Expect = 1e-33
Identities = 72/118 (61%), Positives = 97/118 (82%)
Frame = -1
Query: 587 SSSLIASAINWQSSADKKNYIRIKVVNFGANTVNLKISLNGLDPNSLQPSGSTRTVLTSA 408
S+SL+ASAI+W+++ K+YIRIK VNFGAN+ N+++ + GLDPN ++ SGS +TVLTS
Sbjct: 556 STSLVASAISWKNNG--KDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTST 613
Query: 407 NVMDENSFSQPKKVVPIQSLLQNVGKEMNVVVPPHSFSSFDLLKESSHLKMVGGGSST 234
NVMDENSFSQP+KVVP +SLL+ ++M VV+PPHSFSSFDLLKES+ ++M SS+
Sbjct: 614 NVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKIRMPISDSSS 671
>gb|AAK50089.1|AF372949_1 AT3g10740/T7M13_18 [Arabidopsis thaliana]
gi|23506047|gb|AAN28883.1| At3g10740/T7M13_18
[Arabidopsis thaliana]
Length = 678
Score = 143 bits (361), Expect = 1e-33
Identities = 72/118 (61%), Positives = 97/118 (82%)
Frame = -1
Query: 587 SSSLIASAINWQSSADKKNYIRIKVVNFGANTVNLKISLNGLDPNSLQPSGSTRTVLTSA 408
S+SL+ASAI+W+++ K+YIRIK VNFGAN+ N+++ + GLDPN ++ SGS +TVLTS
Sbjct: 556 STSLVASAISWKNNG--KDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTST 613
Query: 407 NVMDENSFSQPKKVVPIQSLLQNVGKEMNVVVPPHSFSSFDLLKESSHLKMVGGGSST 234
NVMDENSFSQP+KVVP +SLL+ ++M VV+PPHSFSSFDLLKES+ ++M SS+
Sbjct: 614 NVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKIRMPISDSSS 671
>dbj|BAC10349.1| putative arabinoxylan narabinofuranohydrolase isoenzyme AXAH-I
[Oryza sativa (japonica cultivar-group)]
Length = 664
Score = 115 bits (288), Expect = 4e-25
Identities = 56/106 (52%), Positives = 78/106 (72%)
Frame = -1
Query: 584 SSLIASAINWQSSADKKNYIRIKVVNFGANTVNLKISLNGLDPNSLQPSGSTRTVLTSAN 405
+ L+ASAI WQ+S DK Y++IK+VNFG VNL IS++GLD ++ SGS +TVLTS+
Sbjct: 555 NQLVASAITWQNSKDKSTYLKIKLVNFGNQAVNLSISVSGLD-EGIKSSGSKKTVLTSSG 613
Query: 404 VMDENSFSQPKKVVPIQSLLQNVGKEMNVVVPPHSFSSFDLLKESS 267
+DENSF QP+KV P+ S + N ++M V+V P+S +SFDLL + S
Sbjct: 614 PLDENSFQQPQKVAPVSSPVDNANEQMGVLVDPYSLTSFDLLLQPS 659
>gb|AAK21880.1|AF320325_1 arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II [Hordeum
vulgare]
Length = 656
Score = 111 bits (278), Expect = 6e-24
Identities = 60/109 (55%), Positives = 76/109 (69%)
Frame = -1
Query: 587 SSSLIASAINWQSSADKKNYIRIKVVNFGANTVNLKISLNGLDPNSLQPSGSTRTVLTSA 408
S SL ASAI WQ S + N++R+K+VNFG++TV+L IS++GL S+ GS TVLTS+
Sbjct: 547 SGSLAASAITWQDSGN--NFLRVKIVNFGSDTVSLTISVSGLQA-SINALGSNATVLTSS 603
Query: 407 NVMDENSFSQPKKVVPIQSLLQNVGKEMNVVVPPHSFSSFDLLKESSHL 261
NV DENSFS P KVVP+ S L N ++M V + HSFSSFDL S L
Sbjct: 604 NVKDENSFSNPTKVVPVTSQLHNAAEQMQVTLAAHSFSSFDLALAQSEL 652
>gb|AAL18931.1|AF429985_1 arabinosidase ARA-1 [Lycopersicon esculentum]
Length = 674
Score = 109 bits (272), Expect = 3e-23
Identities = 61/122 (50%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Frame = -1
Query: 587 SSSLIASAINWQSSADKKNYIRIKVVNFGANTVNLKISLNGLDPNSLQP-SGSTRTVLTS 411
S+SLIASAI W++S D +Y+RIKVVNFG V KISL GL NSL+ G+ T LTS
Sbjct: 552 SNSLIASAITWRNSLDNNDYLRIKVVNFGTTAVITKISLTGLGQNSLETLFGAVMTELTS 611
Query: 410 ANVMDENSFSQPKKVVPIQSLLQNVGKEMNVVVPPHSFSSFDLLKESSHLKMVGGGSSTD 231
NVMDENSF +P KV+P+++ ++ V M+VV+ P S +S D L S V S
Sbjct: 612 NNVMDENSFREPNKVIPVKTQVEKVSDNMDVVLAPRSLNSIDFLLRKSINNNVDTASVLK 671
Query: 230 SS 225
SS
Sbjct: 672 SS 673
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,126,462
Number of Sequences: 1393205
Number of extensions: 9793296
Number of successful extensions: 21814
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 21226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21795
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
