Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003668A_C01 KMC003668A_c01
(638 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194348.1| mitochondrial carrier protein family; protein i... 113 2e-24
ref|NP_172908.1| mitochondrial carrier protein family; protein i... 97 2e-19
gb|AAM13060.1| putative mitochondrial carrier protein [Arabidops... 97 2e-19
gb|AAF63166.1|AC010657_2 T5E21.6 [Arabidopsis thaliana] 97 2e-19
dbj|BAB39403.1| P0456F08.3 [Oryza sativa (japonica cultivar-group)] 95 9e-19
>ref|NP_194348.1| mitochondrial carrier protein family; protein id: At4g26180.1
[Arabidopsis thaliana] gi|7441723|pir||T04273
hypothetical protein F20B18.290 - Arabidopsis thaliana
gi|4538947|emb|CAB39683.1| putative mitochondrial
carrier protein [Arabidopsis thaliana]
gi|7269469|emb|CAB79473.1| putative mitochondrial
carrier protein [Arabidopsis thaliana]
Length = 325
Score = 113 bits (282), Expect = 2e-24
Identities = 60/87 (68%), Positives = 68/87 (77%), Gaps = 1/87 (1%)
Frame = -2
Query: 637 TYPLAVVRRQMQVPIL-SASDNVELKGTLRSMVLIAHKHGWKQLFSGLSINYLKVVPSVA 461
TYPL VVRRQMQV L SA +GT++++ IA + GWKQLFSGLSINYLKVVPSVA
Sbjct: 231 TYPLDVVRRQMQVERLYSAVKEETRRGTMQTLFKIAREEGWKQLFSGLSINYLKVVPSVA 290
Query: 460 LGFTVYDTMKLYLRVPSREEAEVEVVT 380
+GFTVYD MKL+LRVP REE E E VT
Sbjct: 291 IGFTVYDIMKLHLRVPPREEPEAEAVT 317
>ref|NP_172908.1| mitochondrial carrier protein family; protein id: At1g14560.1
[Arabidopsis thaliana]
Length = 331
Score = 96.7 bits (239), Expect = 2e-19
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 4/85 (4%)
Frame = -2
Query: 637 TYPLAVVRRQMQV----PILSASDNVELKGTLRSMVLIAHKHGWKQLFSGLSINYLKVVP 470
TYPL VVRRQMQV P+ S +N K T + I GWKQLF+GLSINY+K+VP
Sbjct: 245 TYPLDVVRRQMQVENLQPMTSEGNNKRYKNTFDGLNTIVRTQGWKQLFAGLSINYIKIVP 304
Query: 469 SVALGFTVYDTMKLYLRVPSREEAE 395
SVA+GFTVY++MK ++R+P RE ++
Sbjct: 305 SVAIGFTVYESMKSWMRIPPRERSK 329
>gb|AAM13060.1| putative mitochondrial carrier protein [Arabidopsis thaliana]
gi|22136184|gb|AAM91170.1| putative mitochondrial
carrier protein [Arabidopsis thaliana]
Length = 152
Score = 96.7 bits (239), Expect = 2e-19
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 4/85 (4%)
Frame = -2
Query: 637 TYPLAVVRRQMQV----PILSASDNVELKGTLRSMVLIAHKHGWKQLFSGLSINYLKVVP 470
TYPL VVRRQMQV P+ S +N K T + I GWKQLF+GLSINY+K+VP
Sbjct: 66 TYPLDVVRRQMQVENLQPMTSEGNNKRYKNTFDGLNTIVRTQGWKQLFAGLSINYIKIVP 125
Query: 469 SVALGFTVYDTMKLYLRVPSREEAE 395
SVA+GFTVY++MK ++R+P RE ++
Sbjct: 126 SVAIGFTVYESMKSWMRIPPRERSK 150
>gb|AAF63166.1|AC010657_2 T5E21.6 [Arabidopsis thaliana]
Length = 319
Score = 96.7 bits (239), Expect = 2e-19
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 4/85 (4%)
Frame = -2
Query: 637 TYPLAVVRRQMQV----PILSASDNVELKGTLRSMVLIAHKHGWKQLFSGLSINYLKVVP 470
TYPL VVRRQMQV P+ S +N K T + I GWKQLF+GLSINY+K+VP
Sbjct: 233 TYPLDVVRRQMQVENLQPMTSEGNNKRYKNTFDGLNTIVRTQGWKQLFAGLSINYIKIVP 292
Query: 469 SVALGFTVYDTMKLYLRVPSREEAE 395
SVA+GFTVY++MK ++R+P RE ++
Sbjct: 293 SVAIGFTVYESMKSWMRIPPRERSK 317
>dbj|BAB39403.1| P0456F08.3 [Oryza sativa (japonica cultivar-group)]
Length = 239
Score = 94.7 bits (234), Expect = 9e-19
Identities = 45/82 (54%), Positives = 60/82 (72%), Gaps = 3/82 (3%)
Frame = -2
Query: 637 TYPLAVVRRQMQVPILSASDNV---ELKGTLRSMVLIAHKHGWKQLFSGLSINYLKVVPS 467
TYPL VVRRQMQV D +++GT + +++I GW+QLF+GLS+NY+KVVPS
Sbjct: 150 TYPLDVVRRQMQVQSQQYHDKFGGPQIRGTFQGLMIIKQTQGWRQLFAGLSLNYIKVVPS 209
Query: 466 VALGFTVYDTMKLYLRVPSREE 401
VA+GFT YDTMK L++P RE+
Sbjct: 210 VAIGFTAYDTMKSLLKIPPREK 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,305,608
Number of Sequences: 1393205
Number of extensions: 11154440
Number of successful extensions: 23222
Number of sequences better than 10.0: 180
Number of HSP's better than 10.0 without gapping: 22727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23200
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
