Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003667A_C01 KMC003667A_c01
(418 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD03482.2| acyl-CoA binding protein [Arabidopsis thaliana] 32 1.4
gb|AAM65019.1| putative acyl-CoA binding protein [Arabidopsis th... 32 1.4
ref|NP_200159.1| putative protein; protein id: At5g53470.1, supp... 32 1.4
ref|NP_744377.1| multicomponent potassium-proton antiporter, sub... 32 2.4
ref|NP_194507.1| putative acyl-CoA binding protein; protein id: ... 27 2.9
>gb|AAD03482.2| acyl-CoA binding protein [Arabidopsis thaliana]
Length = 338
Score = 32.3 bits (72), Expect = 1.4
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -3
Query: 416 EYLVKHKADTDLKDNDGSCP 357
E+LVK KADT +KD DG+ P
Sbjct: 301 EFLVKQKADTTIKDEDGNSP 320
>gb|AAM65019.1| putative acyl-CoA binding protein [Arabidopsis thaliana]
Length = 338
Score = 32.3 bits (72), Expect = 1.4
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -3
Query: 416 EYLVKHKADTDLKDNDGSCP 357
E+LVK KADT +KD DG+ P
Sbjct: 301 EFLVKQKADTTIKDEDGNSP 320
>ref|NP_200159.1| putative protein; protein id: At5g53470.1, supported by cDNA:
35856., supported by cDNA: gi_16649022, supported by
cDNA: gi_20260069, supported by cDNA: gi_21284388
[Arabidopsis thaliana] gi|8843776|dbj|BAA97324.1|
contains similarity to acyl-CoA binding
protein~gene_id:MYN8.8 [Arabidopsis thaliana]
gi|16649023|gb|AAL24363.1| Unknown protein [Arabidopsis
thaliana] gi|20260070|gb|AAM13382.1| unknown protein
[Arabidopsis thaliana] gi|21284374|gb|AAF08323.2|
acyl-CoA binding protein [Arabidopsis thaliana]
Length = 338
Score = 32.3 bits (72), Expect = 1.4
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -3
Query: 416 EYLVKHKADTDLKDNDGSCP 357
E+LVK KADT +KD DG+ P
Sbjct: 301 EFLVKQKADTTIKDEDGNSP 320
>ref|NP_744377.1| multicomponent potassium-proton antiporter, subunit D, putative
[Pseudomonas putida KT2440]
gi|24983767|gb|AAN67841.1|AE016415_6 multicomponent
potassium-proton antiporter, subunit D, putative
[Pseudomonas putida KT2440]
Length = 559
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Frame = -2
Query: 357 RVTSVRPTGRALQHGGGSILIVSFLCCC------FWLI*PYPNAFRICTCGYNSIFCP*S 196
++ V R L H G +IL ++FL FWL+ Y +A P +
Sbjct: 201 KIPLVPEADRGLLHAGAAILAMAFLVKAGIWPLNFWLVPAYASAS-----------APVA 249
Query: 195 C*YTLFSVVYAYALLRLWLIKY 130
+ + + V YA+LRLW + +
Sbjct: 250 ALFAIMTKVGLYAVLRLWTLLF 271
>ref|NP_194507.1| putative acyl-CoA binding protein; protein id: At4g27780.1,
supported by cDNA: 7361., supported by cDNA:
gi_12039031, supported by cDNA: gi_13661741, supported
by cDNA: gi_19699101 [Arabidopsis thaliana]
gi|7484790|pir||T09017 acyl-CoA-binding protein homolog
T27E11.20 - Arabidopsis thaliana
gi|4972109|emb|CAB43966.1| putative acyl-CoA binding
protein [Arabidopsis thaliana]
gi|7269631|emb|CAB81427.1| putative acyl-CoA binding
protein [Arabidopsis thaliana]
gi|12039032|gb|AAG46056.1|AF178947_1 acyl-CoA binding
protein ACBP2 [Arabidopsis thaliana]
gi|13661742|gb|AAK38078.1|AF320561_1 putative
membrane-bound acyl-CoA binding protein isoform 2
[Arabidopsis thaliana] gi|19699102|gb|AAL90917.1|
AT4g27780/T27E11_20 [Arabidopsis thaliana]
gi|21594802|gb|AAM66045.1| putative acyl-CoA binding
protein [Arabidopsis thaliana]
gi|21689607|gb|AAM67425.1| AT4g27780/T27E11_20
[Arabidopsis thaliana]
Length = 354
Score = 26.9 bits (58), Expect(2) = 2.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 416 EYLVKHKADTDLKDNDGSCP 357
E+LVK A+T KD DG+ P
Sbjct: 316 EFLVKQNANTAAKDEDGNSP 335
Score = 23.1 bits (48), Expect(2) = 2.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 367 GVAPRDICTSNWP 329
G +P D+C S+WP
Sbjct: 332 GNSPLDLCESDWP 344
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,042,139
Number of Sequences: 1393205
Number of extensions: 7401138
Number of successful extensions: 20967
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20955
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
