Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003666A_C01 KMC003666A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_705604.1| putative 3C; Chymotrypsin-like cysteine protein... 34 1.2
ref|NP_653151.1| aev polyprotein [Avian encephalomyelitis virus]... 34 1.2
gb|AAK27166.1| spike glycoprotein [Avian infectious bronchitis v... 32 3.4
gb|AAO80623.1| conserved hypothetical protein [Enterococcus faec... 32 4.5
gb|AAO81960.1| conserved domain protein [Enterococcus faecalis V... 32 4.5
>ref|NP_705604.1| putative 3C; Chymotrypsin-like cysteine proteinase; picornain 3C
[Avian encephalomyelitis virus]
Length = 215
Score = 33.9 bits (76), Expect = 1.2
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 365 GRRTSISVGKCWKALGCTLRGMSIG 439
G RT ISVG+ WKA CT+ GM G
Sbjct: 148 GVRTDISVGRSWKAKACTVAGMCGG 172
>ref|NP_653151.1| aev polyprotein [Avian encephalomyelitis virus]
gi|3954531|emb|CAA12416.1| aev polyprotein [Avian
encephalomyelitis virus]
Length = 2134
Score = 33.9 bits (76), Expect = 1.2
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 365 GRRTSISVGKCWKALGCTLRGMSIG 439
G RT ISVG+ WKA CT+ GM G
Sbjct: 1581 GVRTDISVGRSWKAKACTVAGMCGG 1605
>gb|AAK27166.1| spike glycoprotein [Avian infectious bronchitis virus]
Length = 551
Score = 32.3 bits (72), Expect = 3.4
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 263 IDSGFCESSESVEEVVLASFLEYQVIRHCVIFSSGRRTSISVGKCWKALGCTLRGM 430
ID G ++ S+ +S + + + C + + T++ V C+K +GC+L GM
Sbjct: 70 IDGGRVVNASSIAMTAPSSGMAWSSSQFCTAYCNFSDTTVFVTHCYKHVGCSLTGM 125
>gb|AAO80623.1| conserved hypothetical protein [Enterococcus faecalis V583]
Length = 574
Score = 32.0 bits (71), Expect = 4.5
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 70 EYASKPLTLLATYTASHLHCWINQQNVQIPPRYLIQSHLKNLV 198
E + P + T A HLHCW+ Q R I H +NLV
Sbjct: 275 EVEALPWGQIKTLLAKHLHCWMQQAIFTYDGRLSIGYHYENLV 317
>gb|AAO81960.1| conserved domain protein [Enterococcus faecalis V583]
Length = 1259
Score = 32.0 bits (71), Expect = 4.5
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = -3
Query: 468 ITIKHIYG--EQPMLIPLSVQPRAFQHLPTEIEVLLPDENITQWRITWYSKNDANTTSST 295
+T KHI G E P L L+ R +LPTE+ L D + T+ ++ + + +N + S+
Sbjct: 1071 VTAKHIVGFKELPALDRLTGTSRGELNLPTEVIAKLDDGSETKLKVISWDDDVSNYSPSS 1130
Query: 294 DSEDSQKPESIGE 256
Q P ++ E
Sbjct: 1131 PPGTYQFPAAVEE 1143
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,127,698
Number of Sequences: 1393205
Number of extensions: 9401497
Number of successful extensions: 23362
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 22629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23358
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
