Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003664A_C01 KMC003664A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC10209.1| putative extracellular dermal glycoprotein [Cice... 91 8e-38
ref|NP_171821.1| unknown protein; protein id: At1g03220.1, suppo... 85 2e-31
gb|AAM61574.1| EDGP precursor [Arabidopsis thaliana] 84 3e-31
ref|NP_563679.1| expressed protein; protein id: At1g03230.1, sup... 79 1e-30
ref|NP_197411.1| dermal glycoprotein precursor -like protein; pr... 88 2e-28
>emb|CAC10209.1| putative extracellular dermal glycoprotein [Cicer arietinum]
Length = 369
Score = 91.3 bits (225), Expect(2) = 8e-38
Identities = 45/90 (50%), Positives = 61/90 (67%)
Frame = -3
Query: 663 NFDTSLLSINNKGNGGTKLSTVIPHTKLHTLIYKPLVEHFV*QAVGRKMKSVPAVEPFGA 484
N SL SI+NKGNGGTK+ST+ P T+L +YKP + F+ +A RK+K V +V PF A
Sbjct: 215 NLKPSLWSIDNKGNGGTKISTMSPFTELQRSVYKPFIRDFLKKASDRKLKKVESVAPFEA 274
Query: 483 CFDSKTVGNTNTGPDVPKIDLDLNGGVQWT 394
CF+S + N+ +P+IDL L GGVQW+
Sbjct: 275 CFESTNIENS-----LPRIDLVLQGGVQWS 299
Score = 88.2 bits (217), Expect(2) = 8e-38
Identities = 46/70 (65%), Positives = 49/70 (69%), Gaps = 6/70 (8%)
Frame = -1
Query: 392 IYGGNSMVKVGKNKLCLGFVDGGN------IRTSIVLGGHQLEDNFLEFDLVDSKLGFSN 231
IYG N MV V KN CLGFVDGG + SIV+GGHQLEDN L FDL SKL FS+
Sbjct: 300 IYGNNLMVNVKKNVACLGFVDGGTEPRMSFAKASIVIGGHQLEDNLLVFDLNSSKLSFSS 359
Query: 230 SLLVHNVSCS 201
SLLVHN SCS
Sbjct: 360 SLLVHNASCS 369
>ref|NP_171821.1| unknown protein; protein id: At1g03220.1, supported by cDNA:
12454., supported by cDNA: gi_13272442, supported by
cDNA: gi_14334705, supported by cDNA: gi_16323419
[Arabidopsis thaliana] gi|25296172|pir||F86163
hypothetical protein F15K9.17 - Arabidopsis thaliana
gi|3850579|gb|AAC72119.1| Strong similarity to gb|D14550
extracellular dermal glycoprotein (EDGP) precursor from
Daucus carota. ESTs gb|H37281, gb|T44167, gb|T21813,
gb|N38437, gb|Z26470, gb|R65072, gb|N76373, gb|F15470,
gb|Z35182, gb|H76373, gb|Z34678 and gb|Z35387 come from
this gene. [Arabidopsis thaliana]
gi|13272443|gb|AAK17160.1|AF325092_1 unknown protein
[Arabidopsis thaliana] gi|14334706|gb|AAK59531.1|
unknown protein [Arabidopsis thaliana]
gi|16323420|gb|AAL15204.1| unknown protein [Arabidopsis
thaliana]
Length = 433
Score = 84.7 bits (208), Expect(2) = 2e-31
Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Frame = -1
Query: 395 RIYGGNSMVKVGKNKLCLGFVDGG-NIRTSIVLGGHQLEDNFLEFDLVDSKLGFSNSLLV 219
RI+G NSMV V + +CLGFVDGG N RTS+V+GG QLEDN +EFDL +K GFS++LL
Sbjct: 360 RIFGANSMVSVSDDVICLGFVDGGVNARTSVVIGGFQLEDNLIEFDLASNKFGFSSTLLG 419
Query: 218 HNVSCSHNRF 189
+C++ F
Sbjct: 420 RQTNCANFNF 429
Score = 73.6 bits (179), Expect(2) = 2e-31
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = -3
Query: 651 SLLSIN-NKGNGGTKLSTVIPHTKLHTLIYKPLVEHFV*QAVGRKMKSVPAVEPFGACFD 475
+LL IN + G GGTK+S+V P+T L + IY FV QA R +K V +V+PFGACF
Sbjct: 273 TLLKINASTGIGGTKISSVNPYTVLESSIYNAFTSEFVKQAAARSIKRVASVKPFGACFS 332
Query: 474 SKTVGNTNTGPDVPKIDLDLN 412
+K VG T G VP+I+L L+
Sbjct: 333 TKNVGVTRLGYAVPEIELVLH 353
>gb|AAM61574.1| EDGP precursor [Arabidopsis thaliana]
Length = 433
Score = 83.6 bits (205), Expect(2) = 3e-31
Identities = 39/70 (55%), Positives = 52/70 (73%), Gaps = 1/70 (1%)
Frame = -1
Query: 395 RIYGGNSMVKVGKNKLCLGFVDGG-NIRTSIVLGGHQLEDNFLEFDLVDSKLGFSNSLLV 219
RI+G NSMV V + +CLGFVDGG N RTS+V+GG QLEDN +EFDL ++ GFS++LL
Sbjct: 360 RIFGANSMVSVSDDVICLGFVDGGVNARTSVVIGGFQLEDNLIEFDLASNRFGFSSTLLG 419
Query: 218 HNVSCSHNRF 189
+C++ F
Sbjct: 420 RQTNCANFNF 429
Score = 73.9 bits (180), Expect(2) = 3e-31
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = -3
Query: 651 SLLSIN-NKGNGGTKLSTVIPHTKLHTLIYKPLVEHFV*QAVGRKMKSVPAVEPFGACFD 475
+LL IN + G GGTK+S+V P+T L + IY FV QA+ R +K V +V+PFGACF
Sbjct: 273 TLLKINASTGFGGTKISSVNPYTVLESSIYNAFTSEFVKQALARSIKRVASVKPFGACFS 332
Query: 474 SKTVGNTNTGPDVPKIDLDLN 412
+K VG T G VP+I+L L+
Sbjct: 333 TKNVGVTRLGYAVPEIELVLH 353
>ref|NP_563679.1| expressed protein; protein id: At1g03230.1, supported by cDNA:
gi_12083229 [Arabidopsis thaliana]
gi|25296173|pir||G86163 hypothetical protein F15K9.16 -
Arabidopsis thaliana gi|3850580|gb|AAC72120.1| Strong
similarity to gb|D14550 extracellular dermal
glycoprotein (EDGP) precursor from Daucus carota. ESTs
gb|84105 and gb|AI100071 come from this gene.
[Arabidopsis thaliana]
gi|12083230|gb|AAG48774.1|AF332411_1 unknown protein
[Arabidopsis thaliana]
Length = 434
Score = 79.3 bits (194), Expect(2) = 1e-30
Identities = 38/70 (54%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = -1
Query: 395 RIYGGNSMVKVGKNKLCLGFVDGG-NIRTSIVLGGHQLEDNFLEFDLVDSKLGFSNSLLV 219
RI+G NSMV V + +CLGFVDGG N S+V+GG QLEDN +EFDL +K GFS++LL
Sbjct: 361 RIFGANSMVSVSDDVICLGFVDGGVNPGASVVIGGFQLEDNLIEFDLASNKFGFSSTLLG 420
Query: 218 HNVSCSHNRF 189
+C++ F
Sbjct: 421 RQTNCANFNF 430
Score = 76.3 bits (186), Expect(2) = 1e-30
Identities = 41/83 (49%), Positives = 54/83 (64%), Gaps = 1/83 (1%)
Frame = -3
Query: 657 DTSLLSIN-NKGNGGTKLSTVIPHTKLHTLIYKPLVEHFV*QAVGRKMKSVPAVEPFGAC 481
D +LL IN + G GGTK+S+V P+T L + IYK F+ QA R +K V +V+PFGAC
Sbjct: 272 DPTLLKINASTGIGGTKISSVNPYTVLESSIYKAFTSEFIRQAAARSIKRVASVKPFGAC 331
Query: 480 FDSKTVGNTNTGPDVPKIDLDLN 412
F +K VG T G VP+I L L+
Sbjct: 332 FSTKNVGVTRLGYAVPEIQLVLH 354
>ref|NP_197411.1| dermal glycoprotein precursor -like protein; protein id:
At5g19100.1 [Arabidopsis thaliana]
Length = 391
Score = 88.2 bits (217), Expect(2) = 2e-28
Identities = 44/69 (63%), Positives = 52/69 (74%), Gaps = 1/69 (1%)
Frame = -1
Query: 395 RIYGGNSMVKVGKNKLCLGFVDGG-NIRTSIVLGGHQLEDNFLEFDLVDSKLGFSNSLLV 219
RIYG NS+VKV KN +CLGFVDGG + IV+GG Q+EDN +EFDL SK FS+SLL+
Sbjct: 319 RIYGSNSLVKVNKNVVCLGFVDGGVKPKYPIVIGGFQMEDNLVEFDLEASKFSFSSSLLL 378
Query: 218 HNVSCSHNR 192
HN SCS R
Sbjct: 379 HNTSCSVQR 387
Score = 59.7 bits (143), Expect(2) = 2e-28
Identities = 34/75 (45%), Positives = 43/75 (57%)
Frame = -3
Query: 621 GGTKLSTVIPHTKLHTLIYKPLVEHFV*QAVGRKMKSVPAVEPFGACFDSKTVGNTNTGP 442
G TK+ST+ P+T T +YK L+ F K+ PAV+PFGACF S N G
Sbjct: 253 GATKISTLAPYTVFQTSLYKALLTAF---TENIKIAKAPAVKPFGACFYS------NGGR 303
Query: 441 DVPKIDLDLNGGVQW 397
VP IDL L+GG +W
Sbjct: 304 GVPVIDLVLSGGAKW 318
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,700,744
Number of Sequences: 1393205
Number of extensions: 14307067
Number of successful extensions: 29716
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 28660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29647
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
