Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003654A_C01 KMC003654A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL57666.1| AT5g53140/MFH8_8 [Arabidopsis thaliana] gi|221372... 126 2e-28
ref|NP_568786.1| protein phosphatase 2C (PP2C); protein id: At5g... 126 2e-28
dbj|BAB08417.1| protein phosphatase 2C-like [Arabidopsis thaliana] 126 2e-28
dbj|BAB67954.1| putative protein phosphatase 2C-like protein [Or... 102 4e-21
dbj|BAB88944.1| protein phosphatase 2C [Mesembryanthemum crystal... 91 1e-17
>gb|AAL57666.1| AT5g53140/MFH8_8 [Arabidopsis thaliana] gi|22137282|gb|AAM91486.1|
AT5g53140/MFH8_8 [Arabidopsis thaliana]
Length = 420
Score = 126 bits (316), Expect = 2e-28
Identities = 63/91 (69%), Positives = 74/91 (81%)
Frame = -2
Query: 565 AEPEIQDRDIDQETELLVLASDGLWDVVPNEDAVSLARNEEEAEAAARKLTESAFTRGSA 386
AEPEIQD +ID E ELLVLASDGLWDVVPNEDAV+LA++EEE EAAARKLT++AF+RGSA
Sbjct: 278 AEPEIQDLEIDHEAELLVLASDGLWDVVPNEDAVALAQSEEEPEAAARKLTDTAFSRGSA 337
Query: 385 DNITCIVVRFHHEKAHLAEPDNAGPASSHHE 293
DNITCIVV+F H+K + + A S E
Sbjct: 338 DNITCIVVKFRHDKTESPKIETNAMAESEPE 368
>ref|NP_568786.1| protein phosphatase 2C (PP2C); protein id: At5g53140.1, supported
by cDNA: gi_15027924, supported by cDNA: gi_18086419,
supported by cDNA: gi_20259166 [Arabidopsis thaliana]
gi|15027925|gb|AAK76493.1| putative protein phosphatase
2C [Arabidopsis thaliana] gi|20259167|gb|AAM14299.1|
putative phosphatase 2C [Arabidopsis thaliana]
Length = 420
Score = 126 bits (316), Expect = 2e-28
Identities = 63/91 (69%), Positives = 74/91 (81%)
Frame = -2
Query: 565 AEPEIQDRDIDQETELLVLASDGLWDVVPNEDAVSLARNEEEAEAAARKLTESAFTRGSA 386
AEPEIQD +ID E ELLVLASDGLWDVVPNEDAV+LA++EEE EAAARKLT++AF+RGSA
Sbjct: 278 AEPEIQDLEIDHEAELLVLASDGLWDVVPNEDAVALAQSEEEPEAAARKLTDTAFSRGSA 337
Query: 385 DNITCIVVRFHHEKAHLAEPDNAGPASSHHE 293
DNITCIVV+F H+K + + A S E
Sbjct: 338 DNITCIVVKFRHDKTESPKIETNAMAESEPE 368
>dbj|BAB08417.1| protein phosphatase 2C-like [Arabidopsis thaliana]
Length = 307
Score = 126 bits (316), Expect = 2e-28
Identities = 63/91 (69%), Positives = 74/91 (81%)
Frame = -2
Query: 565 AEPEIQDRDIDQETELLVLASDGLWDVVPNEDAVSLARNEEEAEAAARKLTESAFTRGSA 386
AEPEIQD +ID E ELLVLASDGLWDVVPNEDAV+LA++EEE EAAARKLT++AF+RGSA
Sbjct: 165 AEPEIQDLEIDHEAELLVLASDGLWDVVPNEDAVALAQSEEEPEAAARKLTDTAFSRGSA 224
Query: 385 DNITCIVVRFHHEKAHLAEPDNAGPASSHHE 293
DNITCIVV+F H+K + + A S E
Sbjct: 225 DNITCIVVKFRHDKTESPKIETNAMAESEPE 255
>dbj|BAB67954.1| putative protein phosphatase 2C-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 305
Score = 102 bits (253), Expect = 4e-21
Identities = 49/74 (66%), Positives = 58/74 (78%)
Frame = -2
Query: 565 AEPEIQDRDIDQETELLVLASDGLWDVVPNEDAVSLARNEEEAEAAARKLTESAFTRGSA 386
AEPE+Q+++ID + E L+LASDGLWDVV NE AV+ + EE EAAARKL E AF RGS
Sbjct: 165 AEPEVQEQEIDDDLEFLILASDGLWDVVSNEHAVAFVKAEEGPEAAARKLAEIAFARGST 224
Query: 385 DNITCIVVRFHHEK 344
DNITCIVV+F H K
Sbjct: 225 DNITCIVVKFLHAK 238
>dbj|BAB88944.1| protein phosphatase 2C [Mesembryanthemum crystallinum]
Length = 319
Score = 90.9 bits (224), Expect = 1e-17
Identities = 41/70 (58%), Positives = 55/70 (78%)
Frame = -2
Query: 565 AEPEIQDRDIDQETELLVLASDGLWDVVPNEDAVSLARNEEEAEAAARKLTESAFTRGSA 386
A+PEIQ+ +D E L+LASDGLWDVV NE+AV++ + ++ E AA+KL + A+ RGSA
Sbjct: 210 ADPEIQEEVVDSSLEFLILASDGLWDVVTNEEAVTMVKPIQDTEEAAKKLMQEAYQRGSA 269
Query: 385 DNITCIVVRF 356
DNITC+VVRF
Sbjct: 270 DNITCVVVRF 279
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,187,205
Number of Sequences: 1393205
Number of extensions: 9086724
Number of successful extensions: 34078
Number of sequences better than 10.0: 444
Number of HSP's better than 10.0 without gapping: 29734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32636
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
