Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003653A_C01 KMC003653A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB78490.1| 26S proteasome regulatory particle non-ATPase su... 187 6e-47
ref|NP_176633.1| 26S proteasome regulatory subunit (RPN12), puta... 181 7e-45
ref|NP_199019.1| putative protein; protein id: At5g42040.1 [Arab... 177 1e-43
gb|AAO51336.1| similar to Oryza sativa (Rice). 26S proteasome re... 100 2e-20
dbj|BAB22458.2| unnamed protein product [Mus musculus] gi|263852... 84 1e-15
>dbj|BAB78490.1| 26S proteasome regulatory particle non-ATPase subunit12 [Oryza
sativa (japonica cultivar-group)]
Length = 267
Score = 187 bits (476), Expect = 6e-47
Identities = 92/115 (80%), Positives = 101/115 (87%)
Frame = -3
Query: 567 MEGAYNRVLSACQTVPHETYVYFMDLLAKTVRHEIAGCSEKEYGSLPIKDARKTLPFSSD 388
MEGAYNRVLSA Q VPHETYVYFMDLLAKTVR E+AGCSEK Y + I +AR+ L FSSD
Sbjct: 153 MEGAYNRVLSARQAVPHETYVYFMDLLAKTVRDELAGCSEKGYDYMSIAEARQVLMFSSD 212
Query: 387 KELFEYIKEEHPEWEIKNGLVFFQKAKESAPCKEIPSLQLINQTLSYARELERIV 223
KEL +YI EEHPEWE+K+G VFFQKAKE+ PCKEIPSLQ+INQTLSYARELERIV
Sbjct: 213 KELHQYIAEEHPEWEVKDGSVFFQKAKETQPCKEIPSLQVINQTLSYARELERIV 267
>ref|NP_176633.1| 26S proteasome regulatory subunit (RPN12), putative; protein id:
At1g64520.1, supported by cDNA: gi_14532465, supported
by cDNA: gi_15294147 [Arabidopsis thaliana]
gi|25338454|pir||H96668 protein F1N19.9 [imported] -
Arabidopsis thaliana gi|6633812|gb|AAF19671.1|AC009519_5
F1N19.9 [Arabidopsis thaliana]
gi|14532466|gb|AAK63961.1| At1g64520/F1N19_10
[Arabidopsis thaliana]
gi|15294148|gb|AAK95251.1|AF410265_1 At1g64520/F1N19_10
[Arabidopsis thaliana] gi|23505935|gb|AAN28827.1|
At1g64520/F1N19_10 [Arabidopsis thaliana]
Length = 267
Score = 181 bits (458), Expect = 7e-45
Identities = 89/115 (77%), Positives = 97/115 (83%)
Frame = -3
Query: 567 MEGAYNRVLSACQTVPHETYVYFMDLLAKTVRHEIAGCSEKEYGSLPIKDARKTLPFSSD 388
MEGAYNRVLSA QT P TYVYFMDLLAKT+R EIAGCSEK Y + I DAR+ L FSSD
Sbjct: 153 MEGAYNRVLSARQTAPDATYVYFMDLLAKTIRDEIAGCSEKAYDYVSISDARQMLLFSSD 212
Query: 387 KELFEYIKEEHPEWEIKNGLVFFQKAKESAPCKEIPSLQLINQTLSYARELERIV 223
+EL Y+ +EHPEWE+K G V FQKAKE+APCKEIPSLQLINQTLSYARELERIV
Sbjct: 213 QELLTYVTDEHPEWEVKEGFVVFQKAKETAPCKEIPSLQLINQTLSYARELERIV 267
>ref|NP_199019.1| putative protein; protein id: At5g42040.1 [Arabidopsis thaliana]
gi|9757949|dbj|BAB08437.1| contains similarity to 26S
proteasome regulatory complex subunit~gene_id:MJC20.14
[Arabidopsis thaliana]
Length = 159
Score = 177 bits (448), Expect = 1e-43
Identities = 86/115 (74%), Positives = 96/115 (82%)
Frame = -3
Query: 567 MEGAYNRVLSACQTVPHETYVYFMDLLAKTVRHEIAGCSEKEYGSLPIKDARKTLPFSSD 388
MEGAYNRVLSA QT P ETYVYFMDLLAKT+R EIAGCSEK Y L I + K L FSSD
Sbjct: 45 MEGAYNRVLSARQTAPDETYVYFMDLLAKTIRDEIAGCSEKAYDHLSISEGCKMLLFSSD 104
Query: 387 KELFEYIKEEHPEWEIKNGLVFFQKAKESAPCKEIPSLQLINQTLSYARELERIV 223
++L Y+ EEHPEWE+K+GLV FQK +E+APCKEIPSLQLINQTLSY RELERI+
Sbjct: 105 QQLLTYVNEEHPEWEVKDGLVVFQKTRETAPCKEIPSLQLINQTLSYTRELERIL 159
>gb|AAO51336.1| similar to Oryza sativa (Rice). 26S proteasome regulatory particle
non-ATPase subunit12 [Dictyostelium discoideum]
Length = 263
Score = 99.8 bits (247), Expect = 2e-20
Identities = 50/114 (43%), Positives = 76/114 (65%)
Frame = -3
Query: 564 EGAYNRVLSACQTVPHETYVYFMDLLAKTVRHEIAGCSEKEYGSLPIKDARKTLPFSSDK 385
EG+YN+++ + VP E Y F+D+LA +++ +IA CSEK + +L +KDA K L F+ +
Sbjct: 154 EGSYNKIIQSRSGVPSEYYQVFLDILADSIKEDIANCSEKSFKTLSLKDAEKVLLFNDNN 213
Query: 384 ELFEYIKEEHPEWEIKNGLVFFQKAKESAPCKEIPSLQLINQTLSYARELERIV 223
+ +YIKE + W+++ ++ F EIPSLQLI+QTL YA+ELERIV
Sbjct: 214 QFQQYIKERN--WKVQGDVIQF--GNNDNQTVEIPSLQLIHQTLHYAKELERIV 263
>dbj|BAB22458.2| unnamed protein product [Mus musculus] gi|26385299|dbj|BAB22789.2|
unnamed protein product [Mus musculus]
gi|26389121|dbj|BAC25683.1| unnamed protein product [Mus
musculus]
Length = 289
Score = 84.0 bits (206), Expect = 1e-15
Identities = 45/116 (38%), Positives = 67/116 (56%), Gaps = 1/116 (0%)
Frame = -3
Query: 567 MEGAYNRVLSACQTVPHETYVYFMDLLAKTVRHEIAGCSEKEYGSLPIKDARKTLPFSSD 388
MEG+YN+V A +P E+Y +F+D+L T+R EIAGC EK Y + +A + L FS+
Sbjct: 176 MEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTP 235
Query: 387 KELFEYIKEEHPEWEI-KNGLVFFQKAKESAPCKEIPSLQLINQTLSYARELERIV 223
K++ +Y K+ W + N F ++ IPS +L Q + YAR+LE IV
Sbjct: 236 KKMTDYAKKR--GWVLGPNNYYSFASQQQKPEDSTIPSTELAKQVIEYARQLEMIV 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,981,327
Number of Sequences: 1393205
Number of extensions: 9912451
Number of successful extensions: 27648
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 26651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27605
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
