Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003651A_C01 KMC003651A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43366.1| unknown protein [Arabidopsis thaliana] 65 2e-16
dbj|BAB14992.1| unnamed protein product [Homo sapiens] 51 8e-06
gb|AAK53407.1|AF367471_1 testes development-related NYD-SP19 [Ho... 51 8e-06
ref|NP_777062.1| beta catenin-like 1 [Bos taurus] gi|3169258|gb|... 51 8e-06
gb|AAH36739.1| Unknown (protein for MGC:44929) [Homo sapiens] 51 8e-06
>dbj|BAC43366.1| unknown protein [Arabidopsis thaliana]
Length = 547
Score = 64.7 bits (156), Expect(3) = 2e-16
Identities = 31/45 (68%), Positives = 38/45 (83%)
Frame = -3
Query: 523 HRKLESGLYTLQLIAVILGHVWCSDTPPHMRGRIELLLKQNRLGK 389
+RKLESGLY+LQL+AVILGH+WCS+ MR R+ELLLKQ +L K
Sbjct: 449 NRKLESGLYSLQLVAVILGHIWCSE-HSGMRARVELLLKQQKLSK 492
Score = 35.4 bits (80), Expect(3) = 2e-16
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = -1
Query: 396 LVKSISRIYFRNIMTILVILMDQKRRSEHRPKFRSS 289
L K +S +FR+I T L ILM+Q+RR+E R +F S
Sbjct: 490 LSKPMSSRFFRSITTTLEILMEQRRRNEDRREFSCS 525
Score = 26.6 bits (57), Expect(3) = 2e-16
Identities = 10/11 (90%), Positives = 11/11 (99%)
Frame = -2
Query: 557 DDLEMDEDEKY 525
DDLE+DEDEKY
Sbjct: 438 DDLELDEDEKY 448
>dbj|BAB14992.1| unnamed protein product [Homo sapiens]
Length = 225
Score = 51.2 bits (121), Expect = 8e-06
Identities = 26/74 (35%), Positives = 43/74 (57%)
Frame = -3
Query: 520 RKLESGLYTLQLIAVILGHVWCSDTPPHMRGRIELLLKQNRLGKKHIKDILQEYHDNIGD 341
R+L++GL+ LQ I I+ + C+ P +R R+ +L K ++ I++EY +NIGD
Sbjct: 146 RRLDAGLFVLQHICYIMAEI-CNANVPQIRQRVHQILNMRGSSIKIVRHIIKEYAENIGD 204
Query: 340 LDGPEEKERAQTKI 299
PE +E Q +I
Sbjct: 205 GRSPEFRENEQKRI 218
>gb|AAK53407.1|AF367471_1 testes development-related NYD-SP19 [Homo sapiens]
Length = 376
Score = 51.2 bits (121), Expect = 8e-06
Identities = 26/74 (35%), Positives = 43/74 (57%)
Frame = -3
Query: 520 RKLESGLYTLQLIAVILGHVWCSDTPPHMRGRIELLLKQNRLGKKHIKDILQEYHDNIGD 341
R+L++GL+ LQ I I+ + C+ P +R R+ +L K ++ I++EY +NIGD
Sbjct: 297 RRLDAGLFVLQHICYIMAEI-CNANVPQIRQRVHQILNMRGSSIKIVRHIIKEYAENIGD 355
Query: 340 LDGPEEKERAQTKI 299
PE +E Q +I
Sbjct: 356 GRSPEFRENEQKRI 369
>ref|NP_777062.1| beta catenin-like 1 [Bos taurus] gi|3169258|gb|AAC17837.1| P14 [Bos
taurus]
Length = 122
Score = 51.2 bits (121), Expect = 8e-06
Identities = 27/78 (34%), Positives = 44/78 (55%)
Frame = -3
Query: 520 RKLESGLYTLQLIAVILGHVWCSDTPPHMRGRIELLLKQNRLGKKHIKDILQEYHDNIGD 341
R+L++GL+ LQ I I+ + C+ P +R R+ +L K ++ I++EY +NIGD
Sbjct: 43 RRLDAGLFVLQHICYIMAEI-CNANVPQIRQRVHQILNMRGSSIKIVRHIIKEYAENIGD 101
Query: 340 LDGPEEKERAQTKIQKFL 287
PE +E Q +I L
Sbjct: 102 GRSPEFRESEQKRILALL 119
>gb|AAH36739.1| Unknown (protein for MGC:44929) [Homo sapiens]
Length = 311
Score = 51.2 bits (121), Expect = 8e-06
Identities = 26/74 (35%), Positives = 43/74 (57%)
Frame = -3
Query: 520 RKLESGLYTLQLIAVILGHVWCSDTPPHMRGRIELLLKQNRLGKKHIKDILQEYHDNIGD 341
R+L++GL+ LQ I I+ + C+ P +R R+ +L K ++ I++EY +NIGD
Sbjct: 232 RRLDAGLFVLQHICYIMAEI-CNANVPQIRQRVHQILNMRGSSIKIVRHIIKEYAENIGD 290
Query: 340 LDGPEEKERAQTKI 299
PE +E Q +I
Sbjct: 291 GRSPEFRENEQKRI 304
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,161,136
Number of Sequences: 1393205
Number of extensions: 9927450
Number of successful extensions: 21835
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 21284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21825
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
