Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003647A_C01 KMC003647A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB40340.1| 12-oxophytodienoic acid 10, 11-reductase [Pisum ... 159 2e-38
pir||T09943 probable 12-oxophytodienoate reductase (EC 1.3.1.42)... 157 6e-38
pir||T09998 12-oxophytodienoate reductase (EC 1.3.1.42) - red go... 151 4e-36
pdb|1ICP|A Chain A, Crystal Structure Of 12-Oxophytodienoate Red... 147 8e-35
emb|CAB43506.1| 12-oxophytodienoate reductase [Lycopersicon escu... 147 8e-35
>dbj|BAB40340.1| 12-oxophytodienoic acid 10, 11-reductase [Pisum sativum]
Length = 371
Score = 159 bits (403), Expect = 2e-38
Identities = 74/85 (87%), Positives = 79/85 (92%)
Frame = -1
Query: 522 ETPHSLVPMRKAFNGTFIVAGGYGRQDGINAIAENRADLVVYGRLFLANPDLPKRFALDA 343
ETPHSL PMRKAFNGTF+VAGGY RQDGI AIAENRADLVVYGR F++NPDLPKRFALDA
Sbjct: 277 ETPHSLEPMRKAFNGTFMVAGGYNRQDGIKAIAENRADLVVYGRWFISNPDLPKRFALDA 336
Query: 342 PLNKYKRDTFYVSDPVVGYTDYPFL 268
PLNKY R+TFY SDPV+GYTDYPFL
Sbjct: 337 PLNKYNRETFYSSDPVIGYTDYPFL 361
>pir||T09943 probable 12-oxophytodienoate reductase (EC 1.3.1.42) - Madagascar
periwinkle gi|2232254|gb|AAB62248.1| old-yellow-enzyme
homolog [Catharanthus roseus]
Length = 379
Score = 157 bits (398), Expect = 6e-38
Identities = 72/90 (80%), Positives = 80/90 (88%)
Frame = -1
Query: 534 GEKFETPHSLVPMRKAFNGTFIVAGGYGRQDGINAIAENRADLVVYGRLFLANPDLPKRF 355
GE E PHSL+PMRKAF GTF+ AGGY R+DGI A+AENRADLVVYGRLFLANPDLPKRF
Sbjct: 287 GENCEVPHSLLPMRKAFRGTFMAAGGYDREDGIKALAENRADLVVYGRLFLANPDLPKRF 346
Query: 354 ALDAPLNKYKRDTFYVSDPVVGYTDYPFLE 265
L+APLNKY R+TFY+ DPV+GYTDYPFLE
Sbjct: 347 ELNAPLNKYNRETFYIPDPVLGYTDYPFLE 376
>pir||T09998 12-oxophytodienoate reductase (EC 1.3.1.42) - red goosefoot
(fragment) gi|1129134|emb|CAA63832.1| old yellow enzyme
NADPH dehydrogenase [Chenopodium rubrum]
Length = 99
Score = 151 bits (382), Expect = 4e-36
Identities = 69/90 (76%), Positives = 78/90 (86%)
Frame = -1
Query: 534 GEKFETPHSLVPMRKAFNGTFIVAGGYGRQDGINAIAENRADLVVYGRLFLANPDLPKRF 355
GEK E PHSL+PMRKAF+GTFI AGGY R+DG A+ ++ DLV YGRLFLANPDLP+RF
Sbjct: 7 GEKKECPHSLLPMRKAFDGTFIAAGGYDREDGNKAVMKSYTDLVAYGRLFLANPDLPRRF 66
Query: 354 ALDAPLNKYKRDTFYVSDPVVGYTDYPFLE 265
LDAPLNKY RDTFY+SDP+VGYTDYPFLE
Sbjct: 67 ELDAPLNKYHRDTFYISDPIVGYTDYPFLE 96
>pdb|1ICP|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400 gi|14277801|pdb|1ICP|B
Chain B, Crystal Structure Of 12-Oxophytodienoate
Reductase 1 From Tomato Complexed With Peg400
gi|14277802|pdb|1ICQ|A Chain A, Crystal Structure Of
12-Oxophytodienoate Reductase 1 From Tomato Complexed
With 9r,13r-Opda gi|14277803|pdb|1ICQ|B Chain B, Crystal
Structure Of 12-Oxophytodienoate Reductase 1 From Tomato
Complexed With 9r,13r-Opda gi|14277804|pdb|1ICS|A Chain
A, Crystal Structure Of 12-Oxophytodienoate Reductase 1
From Tomato gi|14277805|pdb|1ICS|B Chain B, Crystal
Structure Of 12-Oxophytodienoate Reductase 1 From Tomato
Length = 376
Score = 147 bits (371), Expect = 8e-35
Identities = 68/89 (76%), Positives = 76/89 (84%)
Frame = -1
Query: 531 EKFETPHSLVPMRKAFNGTFIVAGGYGRQDGINAIAENRADLVVYGRLFLANPDLPKRFA 352
EK E SLVPMRKA+ GTFIVAGGY R+DG A+ E+RADLV YGRLF++NPDLPKRF
Sbjct: 285 EKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDLPKRFE 344
Query: 351 LDAPLNKYKRDTFYVSDPVVGYTDYPFLE 265
L+APLNKY RDTFY SDP+VGYTDYPFLE
Sbjct: 345 LNAPLNKYNRDTFYTSDPIVGYTDYPFLE 373
>emb|CAB43506.1| 12-oxophytodienoate reductase [Lycopersicon esculentum]
Length = 376
Score = 147 bits (371), Expect = 8e-35
Identities = 68/89 (76%), Positives = 76/89 (84%)
Frame = -1
Query: 531 EKFETPHSLVPMRKAFNGTFIVAGGYGRQDGINAIAENRADLVVYGRLFLANPDLPKRFA 352
EK E SLVPMRKA+ GTFIVAGGY R+DG A+ E+RADLV YGRLF++NPDLPKRF
Sbjct: 285 EKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDLPKRFE 344
Query: 351 LDAPLNKYKRDTFYVSDPVVGYTDYPFLE 265
L+APLNKY RDTFY SDP+VGYTDYPFLE
Sbjct: 345 LNAPLNKYNRDTFYTSDPIVGYTDYPFLE 373
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,789,863
Number of Sequences: 1393205
Number of extensions: 9380410
Number of successful extensions: 22677
Number of sequences better than 10.0: 141
Number of HSP's better than 10.0 without gapping: 22093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22643
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
