Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003646A_C01 KMC003646A_c01
(424 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193907.2| glycosyl hydrolase family 1; protein id: At4g21... 105 1e-22
ref|NP_176375.2| glycosyl hydrolase family 1; protein id: At1g61... 94 4e-19
pir||T02128 beta-glucosidase homolog F8K4.3 - Arabidopsis thalia... 94 4e-19
pir||JC7539 beta-glucosidase (EC 3.2.1.21) - Thai rosewood gi|61... 89 1e-17
ref|NP_176374.1| glycosyl hydrolase family 1; protein id: At1g61... 88 3e-17
>ref|NP_193907.2| glycosyl hydrolase family 1; protein id: At4g21760.1 [Arabidopsis
thaliana]
Length = 535
Score = 105 bits (262), Expect = 1e-22
Identities = 45/70 (64%), Positives = 57/70 (81%)
Frame = -2
Query: 297 IRKGADVRGYFGWSLLDNFEWLRGYTIRFGLHHVDYATMKRTPRLSAIWYKEFIARHKTE 118
+RKGADVRGYF WSLLDNFEW+ GYTIRFG++HVD++T +RTPRLSA WYK FI +H+
Sbjct: 458 MRKGADVRGYFAWSLLDNFEWISGYTIRFGMYHVDFSTQERTPRLSASWYKNFIFQHRAL 517
Query: 117 TFQEITLKDR 88
+ + LK +
Sbjct: 518 SKDDWCLKQK 527
>ref|NP_176375.2| glycosyl hydrolase family 1; protein id: At1g61820.1 [Arabidopsis
thaliana]
Length = 516
Score = 94.0 bits (232), Expect = 4e-19
Identities = 50/107 (46%), Positives = 66/107 (60%), Gaps = 10/107 (9%)
Frame = -2
Query: 417 HNITGLLFVCINTYSNLLTSETLEEI*IKILHLCFPIYHL----------IRKGADVRGY 268
HNI +++ N + L ET E ++LH I +L +R GA+V+GY
Sbjct: 406 HNIP--MYITENGFGQLQKPETTVE---ELLHDTKRIQYLSGYLDALKAAMRDGANVKGY 460
Query: 267 FGWSLLDNFEWLRGYTIRFGLHHVDYATMKRTPRLSAIWYKEFIARH 127
F WSLLDNFEWL GY +RFGL HVD+ T+KRTP+ SA WYK FI ++
Sbjct: 461 FAWSLLDNFEWLYGYKVRFGLFHVDFTTLKRTPKQSATWYKNFIEQN 507
>pir||T02128 beta-glucosidase homolog F8K4.3 - Arabidopsis thaliana
gi|3367517|gb|AAC28502.1| Similar to F4I1.26 putative
beta-glucosidase gi|3128187 from A. thaliana BAC
gb|AC004521. ESTs gb|N97083, gb|F19868 and gb|F15482
come from this gene. [Arabidopsis thaliana]
Length = 527
Score = 94.0 bits (232), Expect = 4e-19
Identities = 50/107 (46%), Positives = 66/107 (60%), Gaps = 10/107 (9%)
Frame = -2
Query: 417 HNITGLLFVCINTYSNLLTSETLEEI*IKILHLCFPIYHL----------IRKGADVRGY 268
HNI +++ N + L ET E ++LH I +L +R GA+V+GY
Sbjct: 417 HNIP--MYITENGFGQLQKPETTVE---ELLHDTKRIQYLSGYLDALKAAMRDGANVKGY 471
Query: 267 FGWSLLDNFEWLRGYTIRFGLHHVDYATMKRTPRLSAIWYKEFIARH 127
F WSLLDNFEWL GY +RFGL HVD+ T+KRTP+ SA WYK FI ++
Sbjct: 472 FAWSLLDNFEWLYGYKVRFGLFHVDFTTLKRTPKQSATWYKNFIEQN 518
>pir||JC7539 beta-glucosidase (EC 3.2.1.21) - Thai rosewood
gi|6118076|gb|AAF04007.1|AF163097_1 dalcochinin
8'-O-beta-glucoside beta-glucosidase precursor
[Dalbergia cochinchinensis]
Length = 547
Score = 89.0 bits (219), Expect = 1e-17
Identities = 39/71 (54%), Positives = 51/71 (70%)
Frame = -2
Query: 315 FPIYHLIRKGADVRGYFGWSLLDNFEWLRGYTIRFGLHHVDYATMKRTPRLSAIWYKEFI 136
F + + IR GA+V+G+F WSLLDNFEW GYT RFGL+ V+Y T+ R P+LSA W+K F+
Sbjct: 450 FYVRYAIRSGANVKGFFAWSLLDNFEWAEGYTSRFGLYFVNYTTLNRYPKLSATWFKYFL 509
Query: 135 ARHKTETFQEI 103
AR + EI
Sbjct: 510 ARDQESAKLEI 520
>ref|NP_176374.1| glycosyl hydrolase family 1; protein id: At1g61810.1 [Arabidopsis
thaliana] gi|7435449|pir||T02127 beta-glucosidase
homolog F8K4.2 - Arabidopsis thaliana
gi|3367516|gb|AAC28501.1| Similar to beta-glucosidase
BGQ60 precursor gb|L41869 from Hordeum vulgare.
[Arabidopsis thaliana]
Length = 520
Score = 87.8 bits (216), Expect = 3e-17
Identities = 37/57 (64%), Positives = 45/57 (78%)
Frame = -2
Query: 297 IRKGADVRGYFGWSLLDNFEWLRGYTIRFGLHHVDYATMKRTPRLSAIWYKEFIARH 127
+R GA+V+GYF WSLLDNFEWL GY +RFGL HVD T+KR+P+ SA WYK +I H
Sbjct: 454 MRDGANVKGYFVWSLLDNFEWLFGYKVRFGLFHVDLTTLKRSPKQSASWYKNYIEEH 510
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 349,754,117
Number of Sequences: 1393205
Number of extensions: 6943695
Number of successful extensions: 13267
Number of sequences better than 10.0: 428
Number of HSP's better than 10.0 without gapping: 12968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13216
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
