Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003645A_C01 KMC003645A_c01
(404 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB07491.1| membrane type-matrix metalloproteinase 33 0.85
pir||S22610 DNA (cytosine-5-)-methyltransferase (EC 2.1.1.37) - ... 32 2.5
gb|AAD54507.1|AC010077_1 MTDM_HUMAN [AA 1- 966]; DNA METHYLTRANS... 32 2.5
ref|NP_001370.1| DNA (cytosine-5-)-methyltransferase 1; DNA meth... 32 2.5
gb|AAF23609.1| DNA (cytosine-5)-methyltransferase [Homo sapiens] 32 2.5
>gb|AAB07491.1| membrane type-matrix metalloproteinase
Length = 608
Score = 33.1 bits (74), Expect = 0.85
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 53 EGMYVHPQWELGILYKMKKPNSRILTSMITVGVGNTAKVWRQHMACKGRSDDNRDHH 223
+G +VH E G Y +K+ ++ T M+ V G + + M C G +D ++D H
Sbjct: 490 QGAFVHK--ENGFTYFIKEKSTGNSTKMLRVEPGYPRSILKDFMGCDGPTDRDKDRH 544
>pir||S22610 DNA (cytosine-5-)-methyltransferase (EC 2.1.1.37) - human
Length = 1495
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/52 (34%), Positives = 24/52 (45%)
Frame = -1
Query: 335 LFLPPELFTLYIFTTFPFTENWT*WKSIGTRVKKLSVDDDLYYHHFSPYMPY 180
++LPPE FT I + P R +K VD+DLY H+ Y Y
Sbjct: 818 VYLPPEAFTFNIKLSSPVK-----------RPRKEPVDEDLYPEHYRKYSDY 858
>gb|AAD54507.1|AC010077_1 MTDM_HUMAN [AA 1- 966]; DNA METHYLTRANSFERASE; DNA METASE; MCMT;
M.HSAI [Homo sapiens]
Length = 966
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/52 (34%), Positives = 24/52 (45%)
Frame = -1
Query: 335 LFLPPELFTLYIFTTFPFTENWT*WKSIGTRVKKLSVDDDLYYHHFSPYMPY 180
++LPPE FT I + P R +K VD+DLY H+ Y Y
Sbjct: 818 VYLPPEAFTFNIKLSSPVK-----------RPRKEPVDEDLYPEHYRKYSDY 858
>ref|NP_001370.1| DNA (cytosine-5-)-methyltransferase 1; DNA methyltransferase 1; DNA
methyltransferase [Homo sapiens]
gi|12231019|sp|P26358|DNM1_HUMAN DNA
(cytosine-5)-methyltransferase 1 (Dnmt1) (DNA
methyltransferase HsaI) (DNA MTase HsaI) (MCMT) (M.HsaI)
gi|1632819|emb|CAA45219.1| DNA
(cytosine-5-)-methyltransferase [Homo sapiens]
Length = 1616
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/52 (34%), Positives = 24/52 (45%)
Frame = -1
Query: 335 LFLPPELFTLYIFTTFPFTENWT*WKSIGTRVKKLSVDDDLYYHHFSPYMPY 180
++LPPE FT I + P R +K VD+DLY H+ Y Y
Sbjct: 939 VYLPPEAFTFNIKLSSPVK-----------RPRKEPVDEDLYPEHYRKYSDY 979
>gb|AAF23609.1| DNA (cytosine-5)-methyltransferase [Homo sapiens]
Length = 1280
Score = 31.6 bits (70), Expect = 2.5
Identities = 18/52 (34%), Positives = 24/52 (45%)
Frame = -1
Query: 335 LFLPPELFTLYIFTTFPFTENWT*WKSIGTRVKKLSVDDDLYYHHFSPYMPY 180
++LPPE FT I + P R +K VD+DLY H+ Y Y
Sbjct: 603 VYLPPEAFTFNIKLSSPVK-----------RPRKEPVDEDLYPEHYRKYSDY 643
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 380,957,875
Number of Sequences: 1393205
Number of extensions: 8454178
Number of successful extensions: 17482
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17475
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
