Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003638A_C03 KMC003638A_c03
(794 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P80471|LIPC_SOLTU Light-induced protein, chloroplast precurso... 180 3e-57
dbj|BAA34702.1| homolog to plastid-lipid-associated protein [Cit... 184 3e-57
sp|O99019|LIPC_SOLDE Light-induced protein, chloroplast precurso... 181 9e-57
gb|AAK57565.1|AF290567_1 plastid-lipid associated protein PAP2 [... 174 7e-56
gb|AAK57562.1| plastid-lipid associated protein PAP2 [Brassica r... 174 7e-56
>sp|P80471|LIPC_SOLTU Light-induced protein, chloroplast precursor (Chloroplastic
drought-induced stress protein CDSP-34)
gi|7489242|pir||T07825 fibrillin homolog CDSP34
precursor, chloroplast - potato
gi|2598049|emb|CAA75558.1| chloroplast drought-induced
stress protein, 34 kD) [Solanum tuberosum]
Length = 326
Score = 180 bits (457), Expect(2) = 3e-57
Identities = 87/108 (80%), Positives = 101/108 (92%)
Frame = -3
Query: 792 QTIDSENFAVENSVRFAGPLTTTSISTNAKFEIRSPKRVQIKFEEGIIGTPQLTDSLVIP 613
QTIDSE+F V+NSV FAGPL TTSISTNAKFE+RSPKRVQIKFEEGIIGTPQLTDS+V+P
Sbjct: 183 QTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQLTDSIVLP 242
Query: 612 ENVEFLGQNIDLTPFKGILTSVQDTASSVVRTISNQPPLKIPISGSNA 469
ENVEFLGQ IDL+PFKG++TSVQDTASSV ++IS+QPP+K PI+ +NA
Sbjct: 243 ENVEFLGQKIDLSPFKGLITSVQDTASSVAKSISSQPPIKFPITNNNA 290
Score = 64.3 bits (155), Expect(2) = 3e-57
Identities = 31/34 (91%), Positives = 32/34 (93%)
Frame = -1
Query: 467 QSWLLTTYLDEELRISRGDGGSVFVLIKEGSSLL 366
QSWLLTTYLD+ELRISRGD GSVFVLIKEGS LL
Sbjct: 291 QSWLLTTYLDDELRISRGDAGSVFVLIKEGSPLL 324
>dbj|BAA34702.1| homolog to plastid-lipid-associated protein [Citrus unshiu]
Length = 323
Score = 184 bits (467), Expect(2) = 3e-57
Identities = 90/108 (83%), Positives = 101/108 (93%)
Frame = -3
Query: 792 QTIDSENFAVENSVRFAGPLTTTSISTNAKFEIRSPKRVQIKFEEGIIGTPQLTDSLVIP 613
QTIDSENF V+NS++FAGPL TTSISTNAKFE+RSPKRVQIKFEEG+IGTPQ+TDSLV+P
Sbjct: 180 QTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLP 239
Query: 612 ENVEFLGQNIDLTPFKGILTSVQDTASSVVRTISNQPPLKIPISGSNA 469
ENVEFLGQ IDL+PFKGIL+SVQDTASSV +TIS+QPPLK IS SNA
Sbjct: 240 ENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNA 287
Score = 60.5 bits (145), Expect(2) = 3e-57
Identities = 29/34 (85%), Positives = 30/34 (87%)
Frame = -1
Query: 467 QSWLLTTYLDEELRISRGDGGSVFVLIKEGSSLL 366
QSWLLTTYLDE+LRISR D GSVFV IKEGS LL
Sbjct: 288 QSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLL 321
>sp|O99019|LIPC_SOLDE Light-induced protein, chloroplast precursor (C40.4)
gi|4007750|emb|CAA10372.1| fibrillin [Solanum demissum]
Length = 326
Score = 181 bits (458), Expect(2) = 9e-57
Identities = 87/108 (80%), Positives = 102/108 (93%)
Frame = -3
Query: 792 QTIDSENFAVENSVRFAGPLTTTSISTNAKFEIRSPKRVQIKFEEGIIGTPQLTDSLVIP 613
QTIDSE+F V+NSV FAGPL TTSISTNAKFE+RSPKRVQIKFEEGIIGTPQLTDS+V+P
Sbjct: 183 QTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQLTDSIVLP 242
Query: 612 ENVEFLGQNIDLTPFKGILTSVQDTASSVVRTISNQPPLKIPISGSNA 469
ENVEFLGQ ID++PFKG++TSVQDTASSVV++IS+QPP+K PI+ +NA
Sbjct: 243 ENVEFLGQKIDVSPFKGLITSVQDTASSVVKSISSQPPIKFPITNNNA 290
Score = 62.4 bits (150), Expect(2) = 9e-57
Identities = 30/34 (88%), Positives = 31/34 (90%)
Frame = -1
Query: 467 QSWLLTTYLDEELRISRGDGGSVFVLIKEGSSLL 366
QSWLLTTYLD+ELRI RGD GSVFVLIKEGS LL
Sbjct: 291 QSWLLTTYLDDELRIPRGDAGSVFVLIKEGSPLL 324
>gb|AAK57565.1|AF290567_1 plastid-lipid associated protein PAP2 [Brassica rapa]
Length = 319
Score = 174 bits (442), Expect(2) = 7e-56
Identities = 87/108 (80%), Positives = 96/108 (88%)
Frame = -3
Query: 792 QTIDSENFAVENSVRFAGPLTTTSISTNAKFEIRSPKRVQIKFEEGIIGTPQLTDSLVIP 613
QTIDS+NF VENSV FAGPL TTSISTNAKFEIRSPKRVQIKFEEG+IGTPQLTDS+ IP
Sbjct: 176 QTIDSDNFTVENSVLFAGPLATTSISTNAKFEIRSPKRVQIKFEEGVIGTPQLTDSIEIP 235
Query: 612 ENVEFLGQNIDLTPFKGILTSVQDTASSVVRTISNQPPLKIPISGSNA 469
E VEFLGQ IDLTP +G+LTSVQDTA+SV RTIS+QPPLK + G +A
Sbjct: 236 EYVEFLGQKIDLTPIRGLLTSVQDTATSVARTISSQPPLKFSLPGDSA 283
Score = 65.5 bits (158), Expect(2) = 7e-56
Identities = 31/39 (79%), Positives = 34/39 (86%)
Frame = -1
Query: 482 PAAMPQSWLLTTYLDEELRISRGDGGSVFVLIKEGSSLL 366
P QSWLLTTYLD+++RISRGDGGSVFVLIKEGS LL
Sbjct: 279 PGDSAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSPLL 317
>gb|AAK57562.1| plastid-lipid associated protein PAP2 [Brassica rapa]
Length = 319
Score = 174 bits (442), Expect(2) = 7e-56
Identities = 87/108 (80%), Positives = 96/108 (88%)
Frame = -3
Query: 792 QTIDSENFAVENSVRFAGPLTTTSISTNAKFEIRSPKRVQIKFEEGIIGTPQLTDSLVIP 613
QTIDS+NF VENSV FAGPL TTSISTNAKFEIRSPKRVQIKFEEG+IGTPQLTDS+ IP
Sbjct: 176 QTIDSDNFTVENSVLFAGPLATTSISTNAKFEIRSPKRVQIKFEEGVIGTPQLTDSIEIP 235
Query: 612 ENVEFLGQNIDLTPFKGILTSVQDTASSVVRTISNQPPLKIPISGSNA 469
E VEFLGQ IDLTP +G+LTSVQDTA+SV RTIS+QPPLK + G +A
Sbjct: 236 EYVEFLGQKIDLTPIRGLLTSVQDTATSVARTISSQPPLKFSLPGDSA 283
Score = 65.5 bits (158), Expect(2) = 7e-56
Identities = 31/39 (79%), Positives = 34/39 (86%)
Frame = -1
Query: 482 PAAMPQSWLLTTYLDEELRISRGDGGSVFVLIKEGSSLL 366
P QSWLLTTYLD+++RISRGDGGSVFVLIKEGS LL
Sbjct: 279 PGDSAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSPLL 317
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 624,379,650
Number of Sequences: 1393205
Number of extensions: 13047323
Number of successful extensions: 30252
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 28684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30213
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40055936206
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
