Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003637A_C01 KMC003637A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A41440 protein disulfide-isomerase (EC 5.3.4.1) precursor -... 309 1e-83
sp|P29828|PDI_MEDSA Protein disulfide isomerase precursor (PDI) ... 309 1e-83
sp|Q43116|PDI_RICCO Protein disulfide isomerase precursor (PDI) ... 285 2e-76
sp|Q9XF61|PDI_DATGL Protein disulfide isomerase precursor (PDI) ... 280 1e-74
ref|NP_173594.1| putative protein disulfide isomerase precursor;... 270 6e-72
>pir||A41440 protein disulfide-isomerase (EC 5.3.4.1) precursor - alfalfa (clone
B2) gi|166418|gb|AAA32662.1| putative endomembrane
protein; putative
Length = 512
Score = 309 bits (792), Expect = 1e-83
Identities = 150/178 (84%), Positives = 165/178 (92%)
Frame = -3
Query: 536 IKILRNGGKDSQEYKGPREADGIVDYLKKQTGPASTEIKSADDATAFIGTKKIVIVGVFP 357
IKI RNGGK+ QEYKGPREA+GIV+YLKKQ+GPASTEIKSADDATAF+G K+VIVGVFP
Sbjct: 113 IKIFRNGGKNIQEYKGPREAEGIVEYLKKQSGPASTEIKSADDATAFVGDNKVVIVGVFP 172
Query: 356 KFSGEEFDNFFALAEKLRSDYDFGHTLDAKNLPRGESSVSGPVVRLFKPFDELFVDSKEF 177
KFSGEE+DNF ALAEKLRSDYDF HTL+AK+LP+G+SSVSGPVVRLFKPFDELFVDSK+F
Sbjct: 173 KFSGEEYDNFIALAEKLRSDYDFAHTLNAKHLPKGDSSVSGPVVRLFKPFDELFVDSKDF 232
Query: 176 NVEALEKFIEESSIPVVTVFNNDPSNHPFVSKFFNSQNPKAMLFINFTAEGAESIQAK 3
NVEALEKFIEESS P+VTVFNN+PSNHPFV KFFNS N KAMLFINFT EGAES + K
Sbjct: 233 NVEALEKFIEESSTPIVTVFNNEPSNHPFVVKFFNSPNAKAMLFINFTTEGAESFKTK 290
>sp|P29828|PDI_MEDSA Protein disulfide isomerase precursor (PDI) gi|68467|pir||ISAASS
protein disulfide-isomerase (EC 5.3.4.1) precursor
(clone L1) - alfalfa gi|19654|emb|CAA77575.1| protein
disulfide isomerase [Medicago sativa]
Length = 512
Score = 309 bits (792), Expect = 1e-83
Identities = 150/178 (84%), Positives = 165/178 (92%)
Frame = -3
Query: 536 IKILRNGGKDSQEYKGPREADGIVDYLKKQTGPASTEIKSADDATAFIGTKKIVIVGVFP 357
IKI RNGGK+ QEYKGPREA+GIV+YLKKQ+GPASTEIKSADDATAF+G K+VIVGVFP
Sbjct: 113 IKIFRNGGKNIQEYKGPREAEGIVEYLKKQSGPASTEIKSADDATAFVGDNKVVIVGVFP 172
Query: 356 KFSGEEFDNFFALAEKLRSDYDFGHTLDAKNLPRGESSVSGPVVRLFKPFDELFVDSKEF 177
KFSGEE+DNF ALAEKLRSDYDF HTL+AK+LP+G+SSVSGPVVRLFKPFDELFVDSK+F
Sbjct: 173 KFSGEEYDNFIALAEKLRSDYDFAHTLNAKHLPKGDSSVSGPVVRLFKPFDELFVDSKDF 232
Query: 176 NVEALEKFIEESSIPVVTVFNNDPSNHPFVSKFFNSQNPKAMLFINFTAEGAESIQAK 3
NVEALEKFIEESS P+VTVFNN+PSNHPFV KFFNS N KAMLFINFT EGAES + K
Sbjct: 233 NVEALEKFIEESSTPIVTVFNNEPSNHPFVVKFFNSPNAKAMLFINFTTEGAESFKTK 290
>sp|Q43116|PDI_RICCO Protein disulfide isomerase precursor (PDI) gi|2146797|pir||S62626
protein disulfide-isomerase (EC 5.3.4.1) - castor bean
gi|1134968|gb|AAB05641.1| protein disulphide isomerase
PDI gi|1587210|prf||2206331A protein disulfide isomerase
Length = 498
Score = 285 bits (730), Expect = 2e-76
Identities = 136/178 (76%), Positives = 160/178 (89%)
Frame = -3
Query: 536 IKILRNGGKDSQEYKGPREADGIVDYLKKQTGPASTEIKSADDATAFIGTKKIVIVGVFP 357
+KILRNGGK QEYKGPREADGI +YLKKQ+GPAS EIKS + A FIG KKI IVGVFP
Sbjct: 112 LKILRNGGKSIQEYKGPREADGIAEYLKKQSGPASVEIKSTEAANTFIGDKKIFIVGVFP 171
Query: 356 KFSGEEFDNFFALAEKLRSDYDFGHTLDAKNLPRGESSVSGPVVRLFKPFDELFVDSKEF 177
KFSGEE++N+ ++A+KLRSDY+FGHTLDAK+LP+GESSV+GPVVRLFKPFDELFVD K+F
Sbjct: 172 KFSGEEYENYMSVADKLRSDYEFGHTLDAKHLPQGESSVTGPVVRLFKPFDELFVDFKDF 231
Query: 176 NVEALEKFIEESSIPVVTVFNNDPSNHPFVSKFFNSQNPKAMLFINFTAEGAESIQAK 3
NV+ALEKF+EESS+PVVTVFN+DPSNHPFV KFFNS + KAMLF+NF E A+SI++K
Sbjct: 232 NVDALEKFVEESSMPVVTVFNSDPSNHPFVIKFFNSPDAKAMLFMNFNGEAADSIKSK 289
>sp|Q9XF61|PDI_DATGL Protein disulfide isomerase precursor (PDI)
gi|4704766|gb|AAD28260.1|AF131223_1 protein disulfide
isomerase homolog; PDI [Datisca glomerata]
Length = 507
Score = 280 bits (715), Expect = 1e-74
Identities = 135/177 (76%), Positives = 155/177 (87%)
Frame = -3
Query: 536 IKILRNGGKDSQEYKGPREADGIVDYLKKQTGPASTEIKSADDATAFIGTKKIVIVGVFP 357
IKILRNGGK QEYKGPR+ADGIVDYLKKQ+GP S EIKS +DAT + KKIV+VG+FP
Sbjct: 113 IKILRNGGKIVQEYKGPRDADGIVDYLKKQSGPPSAEIKSIEDATNLVSEKKIVVVGIFP 172
Query: 356 KFSGEEFDNFFALAEKLRSDYDFGHTLDAKNLPRGESSVSGPVVRLFKPFDELFVDSKEF 177
KFSGEEF+NF ALAEKLRSDY+FGHTLDAK LPRGESSVSGPVVRLFKPFDELFVD ++F
Sbjct: 173 KFSGEEFENFSALAEKLRSDYEFGHTLDAKLLPRGESSVSGPVVRLFKPFDELFVDFQDF 232
Query: 176 NVEALEKFIEESSIPVVTVFNNDPSNHPFVSKFFNSQNPKAMLFINFTAEGAESIQA 6
+V ALEK +EESS+P VT+F+ DPSNHPFV KFFN+ N KAMLF+NFT+E ES ++
Sbjct: 233 DVNALEKLVEESSVPTVTIFDKDPSNHPFVVKFFNNANAKAMLFLNFTSEVVESFRS 289
>ref|NP_173594.1| putative protein disulfide isomerase precursor; protein id:
At1g21750.1, supported by cDNA: gi_14334845, supported
by cDNA: gi_17104688 [Arabidopsis thaliana]
gi|11134225|sp|Q9XI01|PDI1_ARATH Probable protein
disulfide isomerase 1 precursor (PDI)
gi|25292645|pir||B86351 protein disulfide-isomerase (EC
5.3.4.1) precursor - Arabidopsis thaliana
gi|5263328|gb|AAD41430.1|AC007727_19 Similar to
gb|Z11499 protein disulfide isomerase from Medicago
sativa. ESTs gb|AI099693, gb|R65226, gb|AA657311,
gb|T43068, gb|T42754, gb|T14005, gb|T76445, gb|H36733,
gb|T43168 and gb|T20649 come from this gene.
[Arabidopsis thaliana] gi|14334846|gb|AAK59601.1|
putative protein disulfide isomerase precursor
[Arabidopsis thaliana] gi|17104689|gb|AAL34233.1|
putative protein disulfide isomerase precursor
[Arabidopsis thaliana]
Length = 501
Score = 270 bits (691), Expect = 6e-72
Identities = 130/178 (73%), Positives = 153/178 (85%)
Frame = -3
Query: 536 IKILRNGGKDSQEYKGPREADGIVDYLKKQTGPASTEIKSADDATAFIGTKKIVIVGVFP 357
IKI RNGGK QEY GPREA+GIV YLKKQ+GPAS EIKSADDA+ + KK+V+VG+FP
Sbjct: 110 IKIFRNGGKAVQEYNGPREAEGIVTYLKKQSGPASAEIKSADDASEVVSDKKVVVVGIFP 169
Query: 356 KFSGEEFDNFFALAEKLRSDYDFGHTLDAKNLPRGESSVSGPVVRLFKPFDELFVDSKEF 177
K SG EFD+F A+AEKLRS+ DF HT DAK LPRGESSV+GPVVRLFKPFDE FVDSK+F
Sbjct: 170 KLSGSEFDSFMAIAEKLRSELDFAHTSDAKLLPRGESSVTGPVVRLFKPFDEQFVDSKDF 229
Query: 176 NVEALEKFIEESSIPVVTVFNNDPSNHPFVSKFFNSQNPKAMLFINFTAEGAESIQAK 3
+ EALEKF++ESSIP++TVF+ DP+NHP+V KFF S N KAMLFINFT EGAES+++K
Sbjct: 230 DGEALEKFVKESSIPLITVFDKDPNNHPYVIKFFESTNTKAMLFINFTGEGAESLKSK 287
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,421,275
Number of Sequences: 1393205
Number of extensions: 10461405
Number of successful extensions: 41077
Number of sequences better than 10.0: 194
Number of HSP's better than 10.0 without gapping: 38580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40954
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
