Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003633A_C01 KMC003633A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86190.1| B1147A04.4 [Oryza sativa (japonica cultivar-group)] 37 6e-06
ref|NP_568639.1| Expressed protein; protein id: At5g44785.1, sup... 39 8e-04
gb|AAC79142.1| hypothetical protein [Arabidopsis thaliana] 39 8e-04
ref|NP_564370.1| expressed protein; protein id: At1g31010.1, sup... 36 8e-04
gb|AAM63642.1| unknown [Arabidopsis thaliana] 36 8e-04
>dbj|BAB86190.1| B1147A04.4 [Oryza sativa (japonica cultivar-group)]
Length = 578
Score = 37.0 bits (84), Expect(2) = 6e-06
Identities = 21/59 (35%), Positives = 31/59 (51%), Gaps = 1/59 (1%)
Frame = +3
Query: 312 PPARSLPVTHLAVKKNATQTS-WVNLTFWDELAHVAFQHVQKGHQIHVSGRLVADTVET 485
P R V+ L ++A W+ + F D+LA VA H+Q+ I+VSG+L D T
Sbjct: 101 PDGRFSAVSVLVQDRHADYPKFWIPIIFQDDLAQVAASHLQEKDHIYVSGQLTGDIPPT 159
Score = 33.9 bits (76), Expect(2) = 6e-06
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 223 PRKVPWQKELCNSVSLIGTVGAPRRNQALPLRQGRF 330
P + +Q + N+V L+GTVGAP + Q LP GRF
Sbjct: 72 PSTIAFQPRVANAVRLVGTVGAPVQLQRLP--DGRF 105
>ref|NP_568639.1| Expressed protein; protein id: At5g44785.1, supported by cDNA:
121432. [Arabidopsis thaliana]
gi|26452626|dbj|BAC43396.1| unknown protein [Arabidopsis
thaliana] gi|28973013|gb|AAO63831.1| unknown protein
[Arabidopsis thaliana]
Length = 440
Score = 38.5 bits (88), Expect(2) = 8e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 375 WVNLTFWDELAHVAFQHVQKGHQIHVSGRLVADT 476
W+ + F +LA +A QHV+K +IHVSG+L D+
Sbjct: 122 WIPIIFEGDLAKIAVQHVKKEDRIHVSGKLFIDS 155
Score = 25.0 bits (53), Expect(2) = 8e-04
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 223 PRKVPWQKELCNSVSLIGTVGAPRRNQALPLRQGRF 330
P+K+ ++ E+ N ++LIG V P Q P G+F
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQP--VQFGPCSDGKF 104
>gb|AAC79142.1| hypothetical protein [Arabidopsis thaliana]
Length = 395
Score = 38.5 bits (88), Expect(2) = 8e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 375 WVNLTFWDELAHVAFQHVQKGHQIHVSGRLVADT 476
W+ + F +LA +A QHV+K +IHVSG+L D+
Sbjct: 122 WIPIIFEGDLAKIAVQHVKKEDRIHVSGKLFIDS 155
Score = 25.0 bits (53), Expect(2) = 8e-04
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 223 PRKVPWQKELCNSVSLIGTVGAPRRNQALPLRQGRF 330
P+K+ ++ E+ N ++LIG V P Q P G+F
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQP--VQFGPCSDGKF 104
>ref|NP_564370.1| expressed protein; protein id: At1g31010.1, supported by cDNA:
25903. [Arabidopsis thaliana] gi|25341922|pir||G86435
protein F17F8.7 [imported] - Arabidopsis thaliana
gi|9755375|gb|AAF98182.1|AC000107_5 F17F8.7 [Arabidopsis
thaliana]
Length = 360
Score = 35.8 bits (81), Expect(2) = 8e-04
Identities = 10/45 (22%), Positives = 30/45 (66%)
Frame = +3
Query: 351 KKNATQTSWVNLTFWDELAHVAFQHVQKGHQIHVSGRLVADTVET 485
+ +++ W+ + F +LAH A +++K ++H++G+++ D +++
Sbjct: 112 ESDSSSNFWIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQS 156
Score = 27.7 bits (60), Expect(2) = 8e-04
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = +1
Query: 223 PRKVPWQKELCNSVSLIGTVGAP 291
P +VP+Q ++ NS+ LIG V P
Sbjct: 62 PMEVPYQPKIANSIDLIGYVHQP 84
>gb|AAM63642.1| unknown [Arabidopsis thaliana]
Length = 360
Score = 35.8 bits (81), Expect(2) = 8e-04
Identities = 10/45 (22%), Positives = 30/45 (66%)
Frame = +3
Query: 351 KKNATQTSWVNLTFWDELAHVAFQHVQKGHQIHVSGRLVADTVET 485
+ +++ W+ + F +LAH A +++K ++H++G+++ D +++
Sbjct: 112 ESDSSSNFWIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQS 156
Score = 27.7 bits (60), Expect(2) = 8e-04
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = +1
Query: 223 PRKVPWQKELCNSVSLIGTVGAP 291
P +VP+Q ++ NS+ LIG V P
Sbjct: 62 PMEVPYQPKIANSIDLIGYVHQP 84
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,724,436
Number of Sequences: 1393205
Number of extensions: 11940264
Number of successful extensions: 45734
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 40942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45370
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
