Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003630A_C01 KMC003630A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC69852.1| nucleic acid binding protein [Nicotiana tabacum] 149 2e-35
ref|NP_175181.1| RNA binding protein 47 (RBP47), putative; prote... 126 2e-28
ref|NP_175180.1| RNA binding protein 47 (RBP47), putative; prote... 126 2e-28
emb|CAD40856.1| OSJNBa0064H22.1 [Oryza sativa (japonica cultivar... 116 1e-25
emb|CAC01238.1| RNA Binding Protein 47 [Nicotiana plumbaginifolia] 102 3e-21
>emb|CAC69852.1| nucleic acid binding protein [Nicotiana tabacum]
Length = 456
Score = 149 bits (377), Expect = 2e-35
Identities = 72/92 (78%), Positives = 75/92 (81%), Gaps = 3/92 (3%)
Frame = -3
Query: 535 FANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYYGAPVYDGYGY 356
FANRN+AEEALQKLNGT IGKQTVRL WGRNPANKQ R DFG+ W G YYG YDGYGY
Sbjct: 365 FANRNDAEEALQKLNGTFIGKQTVRLFWGRNPANKQSRGDFGNQWTGPYYGGHFYDGYGY 424
Query: 355 ALPPPHDPRIY---AAAYGAYPIYGGHQQQVS 269
A PP HDP +Y AAAYGAYPIYG HQQQVS
Sbjct: 425 AFPPQHDPGMYAAAAAAYGAYPIYGTHQQQVS 456
>ref|NP_175181.1| RNA binding protein 47 (RBP47), putative; protein id: At1g47500.1
[Arabidopsis thaliana] gi|25386564|pir||C96515
hypothetical protein F16N3.23 [imported] - Arabidopsis
thaliana gi|5668811|gb|AAD46037.1|AC007519_22 Contains 3
PF|00076 RNA recognition motif domains. EST gb|T20424
comes from this gene. [Arabidopsis thaliana]
Length = 434
Score = 126 bits (316), Expect = 2e-28
Identities = 62/89 (69%), Positives = 69/89 (76%)
Frame = -3
Query: 535 FANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYYGAPVYDGYGY 356
F NR NAEEAL+KLNGT IGKQTVRLSWGRNPANKQ R +G+ W YYG Y+GYGY
Sbjct: 348 FVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGY 407
Query: 355 ALPPPHDPRIYAAAYGAYPIYGGHQQQVS 269
+P P DPR+Y AA YP+YGGHQQQVS
Sbjct: 408 MVPQP-DPRMYPAA-PYYPMYGGHQQQVS 434
>ref|NP_175180.1| RNA binding protein 47 (RBP47), putative; protein id: At1g47490.1,
supported by cDNA: gi_12744992, supported by cDNA:
gi_14334551, supported by cDNA: gi_17065623 [Arabidopsis
thaliana] gi|25386592|pir||B96515 hypothetical protein
F16N3.24 [imported] - Arabidopsis thaliana
gi|5668812|gb|AAD46038.1|AC007519_23 Contains 3 PF|00076
RNA recognition motif domains. ESTs gb|R30092,
gb|R30093, gb|AA394338, gb|N65719 and gb|AA597577 come
from this gene. [Arabidopsis thaliana]
gi|12744993|gb|AAK06876.1|AF344325_1 putative DNA
binding protein [Arabidopsis thaliana]
gi|14334552|gb|AAK59684.1| putative DNA binding protein
[Arabidopsis thaliana] gi|17065624|gb|AAL33806.1|
putative DNA binding protein [Arabidopsis thaliana]
Length = 432
Score = 126 bits (316), Expect = 2e-28
Identities = 62/89 (69%), Positives = 69/89 (76%)
Frame = -3
Query: 535 FANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYYGAPVYDGYGY 356
F NR NAEEAL+KLNGT IGKQTVRLSWGRNPANKQ R +G+ W YYG Y+GYGY
Sbjct: 346 FVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGY 405
Query: 355 ALPPPHDPRIYAAAYGAYPIYGGHQQQVS 269
+P P DPR+Y AA YP+YGGHQQQVS
Sbjct: 406 MVPQP-DPRMYPAA-PYYPMYGGHQQQVS 432
>emb|CAD40856.1| OSJNBa0064H22.1 [Oryza sativa (japonica cultivar-group)]
Length = 387
Score = 116 bits (291), Expect = 1e-25
Identities = 55/85 (64%), Positives = 63/85 (73%)
Frame = -3
Query: 535 FANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYYGAPVYDGYGY 356
F +R +AEEALQ LNG+ IGKQ VRLSWGR+P++KQ R D GS YYG P Y GYGY
Sbjct: 301 FVSRTDAEEALQGLNGSVIGKQAVRLSWGRSPSHKQSRADSGSRRNNMYYGTPFYGGYGY 360
Query: 355 ALPPPHDPRIYAAAYGAYPIYGGHQ 281
A P PH P +YAAAYGAYP+YG Q
Sbjct: 361 ASPVPH-PNMYAAAYGAYPVYGSQQ 384
>emb|CAC01238.1| RNA Binding Protein 47 [Nicotiana plumbaginifolia]
Length = 428
Score = 102 bits (254), Expect = 3e-21
Identities = 53/92 (57%), Positives = 63/92 (67%), Gaps = 3/92 (3%)
Frame = -3
Query: 535 FANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYYGAPVYDGYGY 356
F++R++A+EA+QKL+G IGKQ VRLSWGR+PANKQ+R D GS W G Y G Y GYGY
Sbjct: 337 FSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGY 396
Query: 355 ALPPPHDPRIYA--AAYGAYP-IYGGHQQQVS 269
D +YA AAYGA YG HQQ VS
Sbjct: 397 GASQNQDSGMYATGAAYGASSNRYGNHQQPVS 428
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,112,846
Number of Sequences: 1393205
Number of extensions: 9833815
Number of successful extensions: 28611
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 27089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28516
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
