Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003629A_C01 KMC003629A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565764.1| expressed protein; protein id: At2g33330.1, sup... 62 4e-09
ref|NP_187087.1| hypothetical protein; protein id: At3g04370.1 [... 39 0.036
ref|NP_036781.1| syndecan 4; Ryudocan/syndecan 4 [Rattus norvegi... 33 2.6
gb|ZP_00070099.1| hypothetical protein [Oenococcus oeni MCW] 32 4.5
sp|P27197|AURB_CHLAU Auracyanin B precursor (Ac-B) gi|1710986|gb... 32 5.8
>ref|NP_565764.1| expressed protein; protein id: At2g33330.1, supported by cDNA:
35273., supported by cDNA: gi_14596050, supported by
cDNA: gi_20148722 [Arabidopsis thaliana]
gi|14596051|gb|AAK68753.1| Unknown protein [Arabidopsis
thaliana] gi|20148723|gb|AAM10252.1| unknown protein
[Arabidopsis thaliana] gi|20196846|gb|AAB80651.2|
expressed protein [Arabidopsis thaliana]
Length = 304
Score = 62.0 bits (149), Expect = 4e-09
Identities = 35/50 (70%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Frame = -3
Query: 520 SSSSSGSSSFSGQNAGKTVAIILGGAAGVAFLIIMLLFARNLM-KKHDDY 374
SS SS SSS SG GKTVAII+GG AGV FL+I LLF +NLM KK+DDY
Sbjct: 256 SSGSSSSSSSSG-TTGKTVAIIVGGTAGVGFLVICLLFVKNLMKKKYDDY 304
>ref|NP_187087.1| hypothetical protein; protein id: At3g04370.1 [Arabidopsis
thaliana] gi|7547096|gb|AAF63768.1| hypothetical protein
[Arabidopsis thaliana]
Length = 332
Score = 38.9 bits (89), Expect = 0.036
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = -3
Query: 481 NAGKTVAIILGGAAGVAFLIIMLLFARNLMKKHDDY*Q*KMFYCGGKILLEVDCFYIYSF 302
N GK++AI++GG A + F+ I +F ++L KK D G +LL++ FY F
Sbjct: 283 NTGKSLAIVVGGVAALVFVAIFFMFLKSLRKKGD----------GKLLLLDLISFYSIFF 332
>ref|NP_036781.1| syndecan 4; Ryudocan/syndecan 4 [Rattus norvegicus]
gi|464749|sp|P34901|SDC4_RAT SYNDECAN-4 PRECURSOR
(RYUDOCAN CORE PROTEIN) gi|285405|pir||A42410 ryudocan
precursor - rat gi|206823|gb|AAA73167.1| [Rattus
norvegicus ryudocan mRNA, complete cds.], gene product
gi|385619|gb|AAB26725.1| ryudocan; HSPG core protein
[Rattus sp.]
Length = 202
Score = 32.7 bits (73), Expect = 2.6
Identities = 17/48 (35%), Positives = 27/48 (55%)
Frame = -3
Query: 520 SSSSSGSSSFSGQNAGKTVAIILGGAAGVAFLIIMLLFARNLMKKHDD 377
SS+S GS+ F + A+I+GG G+ F + ++L MKK D+
Sbjct: 136 SSTSQGSNIF--ERTEVLAALIVGGVVGILFAVFLILLLVYRMKKKDE 181
>gb|ZP_00070099.1| hypothetical protein [Oenococcus oeni MCW]
Length = 213
Score = 32.0 bits (71), Expect = 4.5
Identities = 10/24 (41%), Positives = 18/24 (74%)
Frame = -1
Query: 147 LYYKGKRYYTQRNECYPEWMENFV 76
+++ GK+Y T R +P+W+ENF+
Sbjct: 100 IFWLGKKYATFRQRGFPKWLENFI 123
>sp|P27197|AURB_CHLAU Auracyanin B precursor (Ac-B) gi|1710986|gb|AAB38318.1| auracyanin
B [Chloroflexus aurantiacus]
gi|22972837|gb|ZP_00019692.1| hypothetical protein
[Chloroflexus aurantiacus]
Length = 235
Score = 31.6 bits (70), Expect = 5.8
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = -3
Query: 517 SSSSGSSSFSGQNAGKTVAIILGGAA-GVAFLIIMLLFARN 398
SSS+G S+FSG +AG I++ G A G ++++++ A N
Sbjct: 15 SSSNGGSTFSGGSAGGPPLIVMMGLAFGAGLIMLIVMIASN 55
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,307,647
Number of Sequences: 1393205
Number of extensions: 9074580
Number of successful extensions: 27771
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 25963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27636
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
