Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003623A_C01 KMC003623A_c01
(459 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB40471.1| cytochrome oxidase II [Miopanesthia deplanata] 32 2.4
ref|NP_758117.1| predicted integral membrane protein [Mycoplasma... 32 3.1
ref|NP_194939.1| putative protein; protein id: At4g32120.1, supp... 32 4.1
dbj|BAC42946.1| unknown protein [Arabidopsis thaliana] 32 4.1
gb|EAA18888.1| Arabidopsis thaliana At1g71270/F3I17_8 [Plasmodiu... 31 6.9
>dbj|BAB40471.1| cytochrome oxidase II [Miopanesthia deplanata]
Length = 227
Score = 32.3 bits (72), Expect = 2.4
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = -1
Query: 357 SVSRRFYSSWSFADTTKYQYNSL*IQ*SVHSFLYQQQN*KDNYRLTDFSNWSSLDMFGSS 178
S+ ++Y S+ ++D K +++S ++ Q DN+RL D +N +SL M
Sbjct: 99 SIGHQWYWSYEYSDFMKVEFDS---------YMIPQNEMNDNFRLLDVNNRASLPMNSFI 149
Query: 177 SIIV 166
II+
Sbjct: 150 RIII 153
>ref|NP_758117.1| predicted integral membrane protein [Mycoplasma penetrans]
gi|26454192|dbj|BAC44521.1| predicted integral membrane
protein [Mycoplasma penetrans]
Length = 600
Score = 32.0 bits (71), Expect = 3.1
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = -1
Query: 423 VLLDLIV*SWLPGAHFTSYLKISVSRRFYSSWSFADTTKYQYNSL*IQ*SVHSFLYQQQN 244
++ + +V +PG S+L + VS +S ++ + KYQY ++ I S + +
Sbjct: 166 IITNFLVVCVIPGLSLVSHLILPVS----NSMEYSSSQKYQYQNINILDSNRNITNEYVA 221
Query: 243 *KDNYRLTDFS-NWSSLDMFGSSSIIVVLSYCLSI 142
K NY + D+S N SS SS I LS+ +I
Sbjct: 222 IKTNYAIRDYSQNLSS----NFSSSITQLSFWSNI 252
>ref|NP_194939.1| putative protein; protein id: At4g32120.1, supported by cDNA:
gi_15292682, supported by cDNA: gi_21281128 [Arabidopsis
thaliana] gi|15292683|gb|AAK92710.1| unknown protein
[Arabidopsis thaliana] gi|21281129|gb|AAM44999.1|
unknown protein [Arabidopsis thaliana]
Length = 345
Score = 31.6 bits (70), Expect = 4.1
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -2
Query: 458 RLCCSSIRQDKVCSL 414
RLCCSS RQ+KVCS+
Sbjct: 330 RLCCSSTRQEKVCSM 344
>dbj|BAC42946.1| unknown protein [Arabidopsis thaliana]
Length = 284
Score = 31.6 bits (70), Expect = 4.1
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -2
Query: 458 RLCCSSIRQDKVCSL 414
RLCCSS RQ+KVCS+
Sbjct: 269 RLCCSSTRQEKVCSM 283
>gb|EAA18888.1| Arabidopsis thaliana At1g71270/F3I17_8 [Plasmodium yoelii yoelii]
Length = 1050
Score = 30.8 bits (68), Expect = 6.9
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 7/45 (15%)
Frame = -3
Query: 157 LLSIYTKTSV-------DYQNIEGKKPLLQNINVLNQLRANCRHC 44
LL++Y KT + D N E ++NI +LN+ NCRHC
Sbjct: 196 LLNVYIKTVLITPQLTNDIINNEINDMFIKNIYILNKKIENCRHC 240
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 324,340,521
Number of Sequences: 1393205
Number of extensions: 5719446
Number of successful extensions: 12408
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12408
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
