Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003622A_C01 KMC003622A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_224680.1| similar to ribosomal protein L6 [imported] - ra... 36 0.40
gb|AAL48203.1|AF378784_1 NADPH-sulfite reductase hemoprotein [Ac... 33 3.4
ref|NP_105080.1| peptidyl-dipeptidase [Mesorhizobium loti] gi|14... 32 4.4
ref|XP_134237.1| similar to open reading frame (251 AA) [Mus mus... 32 5.7
gb|AAO39440.1| SD03652p [Drosophila melanogaster] 31 9.8
>ref|XP_224680.1| similar to ribosomal protein L6 [imported] - rat [Rattus
norvegicus]
Length = 693
Score = 35.8 bits (81), Expect = 0.40
Identities = 21/55 (38%), Positives = 27/55 (48%)
Frame = -2
Query: 503 WKHHSSTIRYVWLHICNPLLDPKIKFIHKLQQYVAFLSLIGYLQSTFRPQNQVHP 339
WK+ S I + + PKIK +H+LQ GYLQS F P N +HP
Sbjct: 130 WKYEISEQGKANQQIVDLQIFPKIKAVHQLQ---------GYLQSQFSPSNVMHP 175
>gb|AAL48203.1|AF378784_1 NADPH-sulfite reductase hemoprotein [Actinobacillus
pleuropneumoniae]
Length = 588
Score = 32.7 bits (73), Expect = 3.4
Identities = 15/54 (27%), Positives = 32/54 (58%)
Frame = +3
Query: 357 GSKSGLQISNQTKKSYILLQLMDELDFGV*KWIANVQPNISYGGTMVLPHLHLP 518
G ++GL+IS K++ L ++++E+D V +W Q N ++G ++ ++ P
Sbjct: 515 GDRAGLRISRLYKENITLQEIVNEIDQLVARWATERQTNEAFGDFVIRSNIIAP 568
>ref|NP_105080.1| peptidyl-dipeptidase [Mesorhizobium loti]
gi|14024262|dbj|BAB50866.1| peptidyl-dipeptidase
[Mesorhizobium loti]
Length = 684
Score = 32.3 bits (72), Expect = 4.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 235 LITIISWRNIFAQSSVVDFL*LSKQLYYHW*IIVLFIEKCVLYL 104
++T ++W ++ S DF+ L QLY HW + +EK L++
Sbjct: 484 MLTDVTWPSVAGTSVSRDFVELPSQLYEHWLTVPAVLEKHALHV 527
>ref|XP_134237.1| similar to open reading frame (251 AA) [Mus musculus]
Length = 279
Score = 32.0 bits (71), Expect = 5.7
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = -1
Query: 315 LAKVSWSVRSTNIQTTLVIIVTVVEHD**LLSLGV---IFLLKVQLWIFYNYLSNYIIIG 145
+ K +W + NI L I +++ LSL + I+L V L I Y YLS Y+ I
Sbjct: 33 VTKNNWIICLLNISIYLSIYLSLS------LSLSLYLSIYLSYVCLSIIYLYLSIYLSIY 86
Query: 144 ELLYCLLRSVCCILLCISCLICE*IA*TLLLSL 46
+ CL S+C +C+S I I ++ LS+
Sbjct: 87 HMSVCL--SICLSYVCLSISIYLSIYLSIYLSI 117
>gb|AAO39440.1| SD03652p [Drosophila melanogaster]
Length = 1235
Score = 31.2 bits (69), Expect = 9.8
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +1
Query: 280 VR*THTPRHLS*EKLRTAAYG*T*FWGLKVDCKYPIKLRKATYCCSLWMNLILGSKSGLQ 459
+R +HT +HL L G W K P+ + TY C +W + L + +
Sbjct: 796 MRWSHTQKHLL---LTFHIEGKVCLWNCNAPEKPPLTI---TYHCPMWCGMFLPTNENII 849
Query: 460 MCNQTYLMVEL 492
MC+ L VEL
Sbjct: 850 MCSGKALSVEL 860
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,035,869
Number of Sequences: 1393205
Number of extensions: 9855721
Number of successful extensions: 22272
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22256
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
