Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003619A_C01 KMC003619A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187365.1| unknown protein; protein id: At3g07090.1, suppo... 100 1e-20
gb|AAG16855.1|AC069145_4 unknown protein [Oryza sativa] 90 2e-17
ref|NP_696597.1| hypothetical protein [Bifidobacterium longum NC... 43 0.003
pir||T52520 hypothetical protein B2J23.160 [imported] - Neurospo... 39 0.050
gb|AAG14414.1| decay-accelerating factor CD55 [Sus scrofa] 38 0.086
>ref|NP_187365.1| unknown protein; protein id: At3g07090.1, supported by cDNA:
gi_17529195 [Arabidopsis thaliana]
gi|6642656|gb|AAF20237.1|AC012395_24 unknown protein
[Arabidopsis thaliana] gi|17529196|gb|AAL38824.1|
unknown protein [Arabidopsis thaliana]
gi|23296881|gb|AAN13194.1| unknown protein [Arabidopsis
thaliana]
Length = 265
Score = 100 bits (249), Expect = 1e-20
Identities = 58/127 (45%), Positives = 77/127 (59%)
Frame = -3
Query: 596 ETTLXSGGVPQVPQFRPSTVNPSLSASANTPKNPSVPNTSTTKEVRGKEDISPQKTATAV 417
ETTL +G VPQVPQFRP P + + P + + K + + TAT
Sbjct: 149 ETTLKAGAVPQVPQFRPQ---PQPFGAFSKDDGPQIV-------IAPKLEAAETSTATEK 198
Query: 416 SPSPSAKPSSDNAVTAADPLGDARNKVQDEIIKEFAAIMATGTMRASEAATLATRRVMQR 237
P P +PS+ DPLGDAR K+Q+EI EFAA+MA GT+RASEAA +AT+RVMQ+
Sbjct: 199 VP-PVIQPSASKEKVKDDPLGDARAKIQEEITSEFAALMAQGTLRASEAAAMATKRVMQK 257
Query: 236 YGQISVS 216
YG ++V+
Sbjct: 258 YGHLNVN 264
>gb|AAG16855.1|AC069145_4 unknown protein [Oryza sativa]
Length = 366
Score = 89.7 bits (221), Expect = 2e-17
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 8/130 (6%)
Frame = -3
Query: 596 ETTLXSGGVPQVPQFRPSTVNPSLSASANTPKNPSVPNTSTTKEVRGKEDISPQKTATAV 417
ET+L +G PQ PQF+PS V +++A+ + P +T + + D + AV
Sbjct: 224 ETSLRAGVAPQPPQFKPSPV-AAVTATQSPPSGSIHVEPKSTASDKTEVDNNGGGIPPAV 282
Query: 416 SPSPSAKPSSDNAVTAA--------DPLGDARNKVQDEIIKEFAAIMATGTMRASEAATL 261
P+P A +S AV A DPL +A+++VQ+EI +EFAAIMATG ++A EAA L
Sbjct: 283 QPAPVAAATSPAAVAEASMAPPPPVDPLREAKSRVQEEIKREFAAIMATGAVQAGEAAAL 342
Query: 260 ATRRVMQRYG 231
ATRRVM+R+G
Sbjct: 343 ATRRVMERHG 352
>ref|NP_696597.1| hypothetical protein [Bifidobacterium longum NCC2705]
gi|23326711|gb|AAN25233.1|AE014774_3 hypothetical
protein [Bifidobacterium longum NCC2705]
Length = 363
Score = 43.1 bits (100), Expect = 0.003
Identities = 32/104 (30%), Positives = 52/104 (49%), Gaps = 3/104 (2%)
Frame = -3
Query: 569 PQVPQFRPSTVNPSLSASANTPK-NPSVPNTSTTKEVRGKEDISPQKTATAVSPSPSAKP 393
P +P RP+ + PS++++ + P + S + T + G SP + TA S SPSA
Sbjct: 233 PSIPAARPAAIRPSVTSTGSMPPVDLSTSISPATTQAHGTTAPSPVSSQTAGSVSPSAAG 292
Query: 392 SSDNAVTAADPLGDARNKVQDEIIKE--FAAIMATGTMRASEAA 267
+ TA + D V D+ I+ A ++AT RA+E+A
Sbjct: 293 LQQSPATAPEQGSD---NVSDKTIRSGPNAQLVATEQERAAESA 333
>pir||T52520 hypothetical protein B2J23.160 [imported] - Neurospora crassa
gi|10303298|emb|CAC10093.1| conserved hypothetical
protein [Neurospora crassa] gi|28926447|gb|EAA35421.1|
hypothetical protein ( (AL442164) conserved hypothetical
protein [Neurospora crassa] )
Length = 572
Score = 38.9 bits (89), Expect = 0.050
Identities = 27/88 (30%), Positives = 43/88 (48%)
Frame = -3
Query: 578 GGVPQVPQFRPSTVNPSLSASANTPKNPSVPNTSTTKEVRGKEDISPQKTATAVSPSPSA 399
G +P+ P S+ N + + + K S + TTK +R ED+ QKT ++ P
Sbjct: 83 GTIPETPDSLSSSSNAPVHLTRSVAKRQSQTSLETTK-IR-TEDVKAQKTPISIGPLQVT 140
Query: 398 KPSSDNAVTAADPLGDARNKVQDEIIKE 315
+P D +V + + R KVQ IIK+
Sbjct: 141 RP-DDISVHHTRGVTERRTKVQSAIIKD 167
>gb|AAG14414.1| decay-accelerating factor CD55 [Sus scrofa]
Length = 498
Score = 38.1 bits (87), Expect = 0.086
Identities = 26/108 (24%), Positives = 45/108 (41%)
Frame = -3
Query: 551 RPSTVNPSLSASANTPKNPSVPNTSTTKEVRGKEDISPQKTATAVSPSPSAKPSSDNAVT 372
+PSTVN + TP+ P+ N +K + SPQK +T +P+ P+ T
Sbjct: 322 KPSTVNTPATDLLPTPQEPTTVNVPDSKAIS-----SPQKPSTVNTPATDLLPTPQEPTT 376
Query: 371 AADPLGDARNKVQDEIIKEFAAIMATGTMRASEAATLATRRVMQRYGQ 228
P + + Q +A AT T + A + + ++ G+
Sbjct: 377 VNVPAPEVPSTSQKPSTANDSAPQATSTTQRFTTAKASLTQTLRETGK 424
Score = 31.6 bits (70), Expect = 8.1
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = -3
Query: 551 RPSTVNPSLSASANTPKNPSVPNTSTTKEVRGKEDISPQKTATAVSPSPSAKPSSDNAVT 372
+PST N + TP+ P+ N +K + SPQK +T +P+ P+ T
Sbjct: 254 KPSTANTLATELLPTPQEPTTVNVPDSKAIS-----SPQKPSTVNTPATDLLPTPQEPTT 308
Query: 371 AADP 360
P
Sbjct: 309 VNVP 312
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,906,970
Number of Sequences: 1393205
Number of extensions: 9968855
Number of successful extensions: 43545
Number of sequences better than 10.0: 260
Number of HSP's better than 10.0 without gapping: 38135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42740
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
