Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003618A_C01 KMC003618A_c01
(424 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD41507.1| OSJNBa0029H02.23 [Oryza sativa (japonica cultiva... 30 5.3
ref|NP_682195.1| cation efflux system protein [Thermosynechococc... 30 5.3
dbj|BAA84536.1| urease F [Helicobacter pylori] 30 5.3
ref|NP_473321.2| N-acetylglucosamine-1-phosphate transferase, pu... 30 7.0
ref|NP_206869.1| urease accessory protein (ureF) [Helicobacter p... 30 7.0
>emb|CAD41507.1| OSJNBa0029H02.23 [Oryza sativa (japonica cultivar-group)]
Length = 342
Score = 30.4 bits (67), Expect = 5.3
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = -2
Query: 423 SAGKALASSYTGTGSFLVYK 364
S+GKALA SY T +FLVYK
Sbjct: 319 SSGKALARSYCKTSAFLVYK 338
>ref|NP_682195.1| cation efflux system protein [Thermosynechococcus elongatus BP-1]
gi|22295129|dbj|BAC08957.1| cation efflux system protein
[Thermosynechococcus elongatus BP-1]
Length = 277
Score = 30.4 bits (67), Expect = 5.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Frame = +3
Query: 162 WFLILVLQLSFNLYLLQHH-------KKMIKITNHSIE*TWTT 269
W LILVL L+ L L +HH +I H++ WTT
Sbjct: 100 WILILVLGLNIGLTLYEHHMGHRLKNSVLIADAKHTLSDVWTT 142
>dbj|BAA84536.1| urease F [Helicobacter pylori]
Length = 254
Score = 30.4 bits (67), Expect = 5.3
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 71 LTTRMELQQDYKKLPVTQPIIRQATAPLELLVSN 172
LT LQQD KK+ + II +T+P+EL ++N
Sbjct: 91 LTYESALQQDLKKILGVEEIITLSTSPMELRLAN 124
>ref|NP_473321.2| N-acetylglucosamine-1-phosphate transferase, putative [Plasmodium
falciparum 3D7] gi|8052281|emb|CAB39070.2|
N-acetylglucosamine-1-phosphate transferase, putative
[Plasmodium falciparum 3D7]
Length = 397
Score = 30.0 bits (66), Expect = 7.0
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 93 NKIIKNYQLHN-L**GRPLLPWNCWFLILVLQLSFNLYLLQH 215
NKI+KNY N + +P + C FLIL + L F LY+L++
Sbjct: 3 NKILKNYVKPNKVIIYKPNISERCLFLILTIYLLFVLYVLKN 44
>ref|NP_206869.1| urease accessory protein (ureF) [Helicobacter pylori 26695]
gi|2507527|sp|Q09065|UREF_HELPY Urease accessory protein
ureF gi|7465449|pir||E64528 urease accessory protein
ureF - Helicobacter pylori (strain 26695 and isolate
85P) gi|2313141|gb|AAD07132.1| urease accessory protein
(ureF) [Helicobacter pylori 26695]
Length = 254
Score = 30.0 bits (66), Expect = 7.0
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 71 LTTRMELQQDYKKLPVTQPIIRQATAPLELLVSN 172
LT LQQD KK+ + +I +T+P+EL ++N
Sbjct: 91 LTYESALQQDLKKILGVEEVIMLSTSPMELRLAN 124
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 344,216,338
Number of Sequences: 1393205
Number of extensions: 6834487
Number of successful extensions: 15596
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15595
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
