Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003614A_C01 KMC003614A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T12634 homeotic protein - common sunflower gi|349379|gb|AAA... 89 1e-24
gb|AAF04916.1|AF011556_1 jasmonic acid 1 [Lycopersicon esculentum] 92 3e-18
ref|NP_177136.1| HD-Zip transcription factor, Athb-13; protein i... 59 7e-16
gb|AAM63933.1| homeobox gene 13 protein [Arabidopsis thaliana] 59 7e-16
dbj|BAA05625.1| DNA-binding protein [Daucus carota] 65 1e-15
>pir||T12634 homeotic protein - common sunflower gi|349379|gb|AAA63765.1| HAHB-1
Length = 313
Score = 89.4 bits (220), Expect(2) = 1e-24
Identities = 58/92 (63%), Positives = 63/92 (68%), Gaps = 13/92 (14%)
Frame = -3
Query: 555 PTESINLN-KETEGSSSNRSENSSDIKLDISRTPAIDSPLSTHHHNSR----TLFPPS-- 397
P E INLN KETEGS SNRSENSS+IKLDISRTPA DSPLS+HH + LFP S
Sbjct: 189 PAELINLNIKETEGSCSNRSENSSEIKLDISRTPATDSPLSSHHQHQHQPIPNLFPSSNI 248
Query: 396 ARPAGS--VAHQLF-QSSSRP---DLQCQKMD 319
RP + VAHQLF SSSRP L C K+D
Sbjct: 249 DRPNSNNIVAHQLFHNSSSRPADHQLHCHKLD 280
Score = 45.4 bits (106), Expect(2) = 1e-24
Identities = 19/27 (70%), Positives = 19/27 (70%)
Frame = -1
Query: 308 KEESLSNMFCGMDDQSGFWPWLGAATF 228
KEE S MF GMDDQSGFWPWL F
Sbjct: 286 KEECFSTMFVGMDDQSGFWPWLEQPQF 312
>gb|AAF04916.1|AF011556_1 jasmonic acid 1 [Lycopersicon esculentum]
Length = 227
Score = 92.4 bits (228), Expect = 3e-18
Identities = 56/86 (65%), Positives = 60/86 (69%), Gaps = 13/86 (15%)
Frame = -3
Query: 552 TESINLNKETEGSSSNRSENSSDIKLDISRTPAIDSPLSTHHHN--SRTLFPPSARPAGS 379
TESINLNKETEGS SNRSENSS+IKLDISRTPAI SPLS HH N SR FPPS + +
Sbjct: 100 TESINLNKETEGSCSNRSENSSEIKLDISRTPAIHSPLSNHHPNISSRPFFPPSMIRSNN 159
Query: 378 --------VAHQLF---QSSSRPDLQ 334
V HQLF SSSR DL+
Sbjct: 160 NNNNNGVVVPHQLFHINSSSSRQDLK 185
Score = 53.1 bits (126), Expect = 2e-06
Identities = 28/53 (52%), Positives = 33/53 (61%), Gaps = 4/53 (7%)
Frame = -1
Query: 389 PQDQLLINSSNLLQGLIFNARRWTTWS----KEESLSNMFCGMDDQSGFWPWL 243
P INSS+ Q L + TT + KEESLSNMFCG+DDQ+ FWPWL
Sbjct: 169 PHQLFHINSSSSRQDLKLMDQNTTTNNSSSVKEESLSNMFCGIDDQTSFWPWL 221
>ref|NP_177136.1| HD-Zip transcription factor, Athb-13; protein id: At1g69780.1,
supported by cDNA: 2913., supported by cDNA:
gi_15982928, supported by cDNA: gi_6644294 [Arabidopsis
thaliana] gi|25404838|pir||H96719 homeobox gene 13
protein, 11736-10437 [imported] - Arabidopsis thaliana
gi|6644295|gb|AAF20996.1|AF208044_1 homeodomain
leucine-zipper protein ATHB13 [Arabidopsis thaliana]
gi|12325190|gb|AAG52541.1|AC013289_8 homeobox gene 13
protein; 11736-10437 [Arabidopsis thaliana]
gi|15982929|gb|AAL09811.1| At1g69780/T6C23_2
[Arabidopsis thaliana] gi|22137260|gb|AAM91475.1|
At1g69780/T6C23_2 [Arabidopsis thaliana]
Length = 294
Score = 58.9 bits (141), Expect(2) = 7e-16
Identities = 39/77 (50%), Positives = 45/77 (57%), Gaps = 9/77 (11%)
Frame = -3
Query: 552 TESINLNKETEGSSSNRSENSSD-IKLDISRTPAIDSPLSTHHHN------SRTLFPPSA 394
TESINLNKETEGS SNRS+NSSD ++LDIS P + T H R FPPS
Sbjct: 183 TESINLNKETEGSCSNRSDNSSDNLRLDISTAPPSNDSTLTGGHPPPPQTVGRHFFPPSP 242
Query: 393 RPA--GSVAHQLFQSSS 349
A + Q FQ+SS
Sbjct: 243 ATATTTTTTMQFFQNSS 259
Score = 46.2 bits (108), Expect(2) = 7e-16
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -1
Query: 308 KEESLSNMFCGMDDQSGFWPWL 243
+E S+SNMFC MDD SGFWPWL
Sbjct: 267 EENSISNMFCAMDDHSGFWPWL 288
>gb|AAM63933.1| homeobox gene 13 protein [Arabidopsis thaliana]
Length = 288
Score = 58.9 bits (141), Expect(2) = 7e-16
Identities = 39/77 (50%), Positives = 45/77 (57%), Gaps = 9/77 (11%)
Frame = -3
Query: 552 TESINLNKETEGSSSNRSENSSD-IKLDISRTPAIDSPLSTHHHN------SRTLFPPSA 394
TESINLNKETEGS SNRS+NSSD ++LDIS P + T H R FPPS
Sbjct: 177 TESINLNKETEGSCSNRSDNSSDNLRLDISTAPPSNDSTLTGGHPPPPQTVGRHFFPPSP 236
Query: 393 RPA--GSVAHQLFQSSS 349
A + Q FQ+SS
Sbjct: 237 ATATTTTTTMQFFQNSS 253
Score = 46.2 bits (108), Expect(2) = 7e-16
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -1
Query: 308 KEESLSNMFCGMDDQSGFWPWL 243
+E S+SNMFC MDD SGFWPWL
Sbjct: 261 EENSISNMFCAMDDHSGFWPWL 282
>dbj|BAA05625.1| DNA-binding protein [Daucus carota]
Length = 308
Score = 65.1 bits (157), Expect(2) = 1e-15
Identities = 47/90 (52%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Frame = -3
Query: 555 PTESINLNKETEGSSSNRS-ENSSDIKLDISRT-PAIDSPLSTHHHNSRTLFPPS----- 397
PTESINLNKETEGSSSNRS ENSS+IK D SRT PAIDS H S LFPP
Sbjct: 197 PTESINLNKETEGSSSNRSTENSSEIKPDFSRTSPAIDS--HPHKLTSIPLFPPPNNNNK 254
Query: 396 ---ARPAGSVAHQLFQSSSRPDLQCQKMDH 316
R A + + S P Q K +H
Sbjct: 255 SSFFRLQQPAAFHMSRPSDHPHQQSVKEEH 284
Score = 39.3 bits (90), Expect(2) = 1e-15
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -1
Query: 308 KEESLSNMFCGMDDQSGFWPWLGAATF 228
KEE NMF G++DQ+ FWPWL F
Sbjct: 281 KEEHFCNMFTGVEDQTAFWPWLEQQPF 307
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,708,607
Number of Sequences: 1393205
Number of extensions: 10249121
Number of successful extensions: 22946
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 22201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22917
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
