Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003613A_C01 KMC003613A_c01
(669 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179889.1| putative casein kinase II catalytic (alpha) sub... 196 3e-49
emb|CAD12663.1| casein kinase II alpha subunit [Sinapis alba] 195 4e-49
emb|CAC80988.1| protein kinase 2 [Beta vulgaris] 176 2e-43
dbj|BAC16172.1| casein kinase II alpha subunit [Oryza sativa (ja... 173 2e-42
dbj|BAC02728.1| casein kinase 2 catalytic subunit [Nicotiana tab... 172 4e-42
>ref|NP_179889.1| putative casein kinase II catalytic (alpha) subunit; protein id:
At2g23070.1, supported by cDNA: gi_17065109, supported
by cDNA: gi_20148298 [Arabidopsis thaliana]
gi|25287638|pir||B84620 hypothetical protein At2g23070
[imported] - Arabidopsis thaliana
gi|3169180|gb|AAC17823.1| putative casein kinase II
catalytic (alpha) subunit [Arabidopsis thaliana]
gi|17065110|gb|AAL32709.1| putative casein kinase II
catalytic (alpha) subunit [Arabidopsis thaliana]
gi|20148299|gb|AAM10040.1| putative casein kinase II
catalytic (alpha) subunit [Arabidopsis thaliana]
Length = 432
Score = 196 bits (497), Expect = 3e-49
Identities = 92/101 (91%), Positives = 97/101 (95%)
Frame = -2
Query: 668 GHDNYDQLVKIAKVLGTDELSAYLNKYRIELDPNLAALIGRHSRKPWAKFINVENQHLAV 489
GHDNYDQLVKIAKVLGTDEL+AYLNKYRIELDPNL +L+GRHSRKPW KFIN ENQHLAV
Sbjct: 328 GHDNYDQLVKIAKVLGTDELNAYLNKYRIELDPNLTSLVGRHSRKPWTKFINSENQHLAV 387
Query: 488 PEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPVRSAESSRT 366
PEAVDFVDKLLRYDHQERPTAKEAMAHPYF P+R+AESSRT
Sbjct: 388 PEAVDFVDKLLRYDHQERPTAKEAMAHPYFYPIRNAESSRT 428
>emb|CAD12663.1| casein kinase II alpha subunit [Sinapis alba]
Length = 414
Score = 195 bits (496), Expect = 4e-49
Identities = 90/101 (89%), Positives = 99/101 (97%)
Frame = -2
Query: 668 GHDNYDQLVKIAKVLGTDELSAYLNKYRIELDPNLAALIGRHSRKPWAKFINVENQHLAV 489
GHDNYDQLVKIAKVLGTDEL+ YLN+YRIELDPNLA+L+GRHSRKPW+KFIN ENQHLAV
Sbjct: 309 GHDNYDQLVKIAKVLGTDELNTYLNRYRIELDPNLASLVGRHSRKPWSKFINSENQHLAV 368
Query: 488 PEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPVRSAESSRT 366
PEAVDFVDKLL+YDHQERPTAKEAMAHPYFNP+R+AESSR+
Sbjct: 369 PEAVDFVDKLLKYDHQERPTAKEAMAHPYFNPIRNAESSRS 409
>emb|CAC80988.1| protein kinase 2 [Beta vulgaris]
Length = 333
Score = 176 bits (447), Expect = 2e-43
Identities = 81/103 (78%), Positives = 94/103 (90%)
Frame = -2
Query: 668 GHDNYDQLVKIAKVLGTDELSAYLNKYRIELDPNLAALIGRHSRKPWAKFINVENQHLAV 489
GHDN+DQLVKIAKVLGTDEL+AYLNKY +ELDP L AL+GRHSRKPW++F+N +NQHL
Sbjct: 230 GHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSRFVNPDNQHLVS 289
Query: 488 PEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPVRSAESSRTRT 360
PEA+DF+DKLLRYDHQ+R TAKEAMAHPYF+ VR+AESSR RT
Sbjct: 290 PEAIDFLDKLLRYDHQDRLTAKEAMAHPYFSQVRAAESSRMRT 332
>dbj|BAC16172.1| casein kinase II alpha subunit [Oryza sativa (japonica
cultivar-group)]
Length = 333
Score = 173 bits (438), Expect = 2e-42
Identities = 80/102 (78%), Positives = 92/102 (89%)
Frame = -2
Query: 668 GHDNYDQLVKIAKVLGTDELSAYLNKYRIELDPNLAALIGRHSRKPWAKFINVENQHLAV 489
GHDN+DQLVKIAKVLGTD L++YLNKYRIELDP L AL+GRHSRKPW+KFIN +NQHL
Sbjct: 230 GHDNHDQLVKIAKVLGTDSLNSYLNKYRIELDPQLEALVGRHSRKPWSKFINADNQHLVS 289
Query: 488 PEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPVRSAESSRTR 363
PEA+DF+DKLLRYDHQ+R TA+EAMAHPYF VR+AE+SR R
Sbjct: 290 PEAIDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRPR 331
>dbj|BAC02728.1| casein kinase 2 catalytic subunit [Nicotiana tabacum]
Length = 312
Score = 172 bits (436), Expect = 4e-42
Identities = 80/103 (77%), Positives = 92/103 (88%)
Frame = -2
Query: 668 GHDNYDQLVKIAKVLGTDELSAYLNKYRIELDPNLAALIGRHSRKPWAKFINVENQHLAV 489
GHDN DQLVKIAKVLGTDEL+AYL+KY++ELDP L A++GRHSRKPW+KFIN +NQHL
Sbjct: 209 GHDNQDQLVKIAKVLGTDELNAYLHKYQLELDPQLEAMVGRHSRKPWSKFINADNQHLVS 268
Query: 488 PEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPVRSAESSRTRT 360
PEA+DF+DKLLRYDHQ R TAKEAMAHPYF VR+AE+SR RT
Sbjct: 269 PEAIDFLDKLLRYDHQSRLTAKEAMAHPYFLQVRAAETSRMRT 311
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,735,847
Number of Sequences: 1393205
Number of extensions: 11437575
Number of successful extensions: 33102
Number of sequences better than 10.0: 953
Number of HSP's better than 10.0 without gapping: 31832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32916
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
