Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003611A_C01 KMC003611A_c01
(695 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_002448.1| mucin 2 [Homo sapiens] gi|2506877|sp|Q02817|MUC... 56 5e-07
pir||A43932 mucin 2 precursor, intestinal - human (fragments) 56 5e-07
gb|AAA59163.1| mucin 56 5e-07
gb|AAA59875.1| mucin 55 7e-07
ref|NP_703081.1| unknown [Rachiplusia ou multiple nucleopolyhedr... 52 1e-05
>ref|NP_002448.1| mucin 2 [Homo sapiens] gi|2506877|sp|Q02817|MUC2_HUMAN Mucin 2
precursor (Intestinal mucin 2) gi|454154|gb|AAB95295.1|
mucin [Homo sapiens]
Length = 5179
Score = 55.8 bits (133), Expect = 5e-07
Identities = 48/134 (35%), Positives = 60/134 (43%)
Frame = +2
Query: 275 T*PLPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPSPPSSP 454
T P PP+ P+ P A TL P T +T P + TP P T+P +PP+S
Sbjct: 1498 TTPSPPMTTPI-TPPASTTTLPPTTTPSPPTTTTTTP---PPTTTPSPPTTTPITPPTST 1553
Query: 455 TPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDSQAPPTA 634
T P PTT S + TT P PT + +PPT +T P P P + PPT
Sbjct: 1554 TTLP------PTTTPSPPPTTTTTP-----PPTTTPSPPTTTT-PSP-PTITTTTPPPTT 1600
Query: 635 TKSHPARFCNLPPP 676
T S P PPP
Sbjct: 1601 TPSPPTTTTTTPPP 1614
Score = 51.2 bits (121), Expect = 1e-05
Identities = 42/137 (30%), Positives = 57/137 (40%), Gaps = 3/137 (2%)
Frame = +2
Query: 275 T*PLPPV---I*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPSPP 445
T P PP+ P T P T P T + + T P + TP P T+P +PP
Sbjct: 1452 TTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPMTTPITPP 1511
Query: 446 SSPTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDSQAP 625
+S T P ++ +P T + TT P PT + +PPT + P + P
Sbjct: 1512 ASTTTLPPTTTPSPPT-----TTTTTPP------PTTTPSPPTTTPITPPT---STTTLP 1557
Query: 626 PTATKSHPARFCNLPPP 676
PT T S P PPP
Sbjct: 1558 PTTTPSPPPTTTTTPPP 1574
Score = 50.1 bits (118), Expect = 3e-05
Identities = 49/147 (33%), Positives = 59/147 (39%), Gaps = 12/147 (8%)
Frame = +2
Query: 272 IT*PLPPVI*PLQNPTAE----PDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPS 439
IT P PP P PT P T T + T P + T P T+ PS
Sbjct: 1396 ITTPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPLPTTTPS 1455
Query: 440 PPSSPT--PSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHP---CPL 604
PP S T P P+++ S PTT S TT P PT + P +T P P P+
Sbjct: 1456 PPISTTTTPPPTTTPSPPTTTPS---PPTTTP----SPPTTTTTTPPPTTTPSPPMTTPI 1508
Query: 605 *PDSQA---PPTATKSHPARFCNLPPP 676
P + PPT T S P PPP
Sbjct: 1509 TPPASTTTLPPTTTPSPPTTTTTTPPP 1535
Score = 49.7 bits (117), Expect = 4e-05
Identities = 43/133 (32%), Positives = 53/133 (39%), Gaps = 2/133 (1%)
Frame = +2
Query: 284 LPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPSPPSSPTPS 463
LPP P PT T P T S +T + TPPP T P ++ TP
Sbjct: 1556 LPPTTTPSPPPTTT--TTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPP 1613
Query: 464 PSSS*SNPTTHYSFFCSQTTAPIFLAFLP--TDSNNPPTRSTHPHPCPL*PDSQAPPTAT 637
P+++ S PTT + T P LP T + PPT +T P P P T T
Sbjct: 1614 PTTTPSPPTT------TPITPPTSTTTLPPTTTPSPPPTTTTTPPPT---TTPSPPTTTT 1664
Query: 638 KSHPARFCNLPPP 676
S P PPP
Sbjct: 1665 PSPPITTTTTPPP 1677
Score = 43.5 bits (101), Expect = 0.003
Identities = 47/139 (33%), Positives = 56/139 (39%), Gaps = 6/139 (4%)
Frame = +2
Query: 275 T*PLPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*AT-SPP----- 436
T P PP PT T P T +T TPPP T SPP
Sbjct: 1576 TTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTT---------TPPPTTTPSPPTTTPI 1626
Query: 437 SPPSSPTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDS 616
+PP+S T P PTT S + TT P PT + +PPT +T P P P+ +
Sbjct: 1627 TPPTSTTTLP------PTTTPSPPPTTTTTP-----PPTTTPSPPTTTT-PSP-PITTTT 1673
Query: 617 QAPPTATKSHPARFCNLPP 673
PPT T S P PP
Sbjct: 1674 TPPPTTTPSSPITTTPSPP 1692
Score = 40.4 bits (93), Expect = 0.024
Identities = 43/144 (29%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Frame = +2
Query: 275 T*PLPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*AT-SP-----P 436
T P PP P+ PT+ TL P +T TPPP T SP P
Sbjct: 1616 TTPSPPTTTPITPPTSTT-TLPPTTTPSPPPTTTT---------TPPPTTTPSPPTTTTP 1665
Query: 437 SPP--SSPTPSPSSS*SNP--TTHYSFFCSQTT-APIFLAFLPTDSNNPPTRSTHPHPCP 601
SPP ++ TP P+++ S+P TT + TT +P P + P+ +T P P P
Sbjct: 1666 SPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPP 1725
Query: 602 L*PDSQAPPTATKSHPARFCNLPP 673
+ +P T LPP
Sbjct: 1726 TTMTTPSPTTTPSPPTTTMTTLPP 1749
Score = 38.5 bits (88), Expect = 0.090
Identities = 43/139 (30%), Positives = 61/139 (42%), Gaps = 9/139 (6%)
Frame = +2
Query: 275 T*PLPPVI*-----PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPS 439
T P PP+ P P++ T T T S P + T P +T+ PS
Sbjct: 1663 TTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPS 1722
Query: 440 PPSS--PTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PD 613
PP + TPSP+++ S PTT + TT P PT +++P T T P P + P
Sbjct: 1723 PPPTTMTTPSPTTTPSPPTT------TMTTLP------PTTTSSPLT--TTPLPPSITPP 1768
Query: 614 SQAP-PTATKSHP-ARFCN 664
+ +P T T + P CN
Sbjct: 1769 TFSPFSTTTPTTPCVPLCN 1787
Score = 38.5 bits (88), Expect = 0.090
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 16/107 (14%)
Frame = +2
Query: 404 WTPPP*ATSPPSPPSSPTPSPSSS*S-NPTTHYSFFCSQTTAP-----------IFLAFL 547
W T+P P ++P+P P+++ + PTT S + TT P L
Sbjct: 1390 WPMDKCITTPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPL 1449
Query: 548 PTDSNNPPTRSTHPHPCPL*PD----SQAPPTATKSHPARFCNLPPP 676
PT + +PP +T P P + +PPT T S P PPP
Sbjct: 1450 PTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPP 1496
Score = 36.2 bits (82), Expect = 0.45
Identities = 46/163 (28%), Positives = 60/163 (36%), Gaps = 36/163 (22%)
Frame = +2
Query: 302 PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATS----PPS----PPSSPT 457
P T P T P T + P + TP P T+ PP+ PP++ T
Sbjct: 1605 PTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTT 1664
Query: 458 PSP------------------SSS*SNPTTHYSFFCSQTT--APIFLAFLP---TDSNNP 568
PSP +++ S PTT + TT +PI P T + P
Sbjct: 1665 PSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPP 1724
Query: 569 PTRSTHPHPC-----PL*PDSQAPPTATKSHPARFCNLPPPIS 682
PT T P P P + PPT T S P LPP I+
Sbjct: 1725 PTTMTTPSPTTTPSPPTTTMTTLPPTTTSS-PLTTTPLPPSIT 1766
>pir||A43932 mucin 2 precursor, intestinal - human (fragments)
Length = 3020
Score = 55.8 bits (133), Expect = 5e-07
Identities = 48/134 (35%), Positives = 60/134 (43%)
Frame = +2
Query: 275 T*PLPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPSPPSSP 454
T P PP+ P+ P A TL P T +T P + TP P T+P +PP+S
Sbjct: 1498 TTPSPPMTTPI-TPPASTTTLPPTTTPSPPTTTTTTP---PPTTTPSPPTTTPITPPTST 1553
Query: 455 TPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDSQAPPTA 634
T P PTT S + TT P PT + +PPT +T P P P + PPT
Sbjct: 1554 TTLP------PTTTPSPPPTTTTTP-----PPTTTPSPPTTTT-PSP-PTITTTTPPPTT 1600
Query: 635 TKSHPARFCNLPPP 676
T S P PPP
Sbjct: 1601 TPSPPTTTTTTPPP 1614
Score = 51.2 bits (121), Expect = 1e-05
Identities = 42/137 (30%), Positives = 57/137 (40%), Gaps = 3/137 (2%)
Frame = +2
Query: 275 T*PLPPV---I*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPSPP 445
T P PP+ P T P T P T + + T P + TP P T+P +PP
Sbjct: 1452 TTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPMTTPITPP 1511
Query: 446 SSPTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDSQAP 625
+S T P ++ +P T + TT P PT + +PPT + P + P
Sbjct: 1512 ASTTTLPPTTTPSPPT-----TTTTTPP------PTTTPSPPTTTPITPPT---STTTLP 1557
Query: 626 PTATKSHPARFCNLPPP 676
PT T S P PPP
Sbjct: 1558 PTTTPSPPPTTTTTPPP 1574
Score = 50.1 bits (118), Expect = 3e-05
Identities = 49/147 (33%), Positives = 59/147 (39%), Gaps = 12/147 (8%)
Frame = +2
Query: 272 IT*PLPPVI*PLQNPTAE----PDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPS 439
IT P PP P PT P T T + T P + T P T+ PS
Sbjct: 1396 ITTPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPLPTTTPS 1455
Query: 440 PPSSPT--PSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHP---CPL 604
PP S T P P+++ S PTT S TT P PT + P +T P P P+
Sbjct: 1456 PPISTTTTPPPTTTPSPPTTTPS---PPTTTP----SPPTTTTTTPPPTTTPSPPMTTPI 1508
Query: 605 *PDSQA---PPTATKSHPARFCNLPPP 676
P + PPT T S P PPP
Sbjct: 1509 TPPASTTTLPPTTTPSPPTTTTTTPPP 1535
Score = 49.7 bits (117), Expect = 4e-05
Identities = 43/133 (32%), Positives = 53/133 (39%), Gaps = 2/133 (1%)
Frame = +2
Query: 284 LPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPSPPSSPTPS 463
LPP P PT T P T S +T + TPPP T P ++ TP
Sbjct: 1556 LPPTTTPSPPPTTT--TTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPP 1613
Query: 464 PSSS*SNPTTHYSFFCSQTTAPIFLAFLP--TDSNNPPTRSTHPHPCPL*PDSQAPPTAT 637
P+++ S PTT + T P LP T + PPT +T P P P T T
Sbjct: 1614 PTTTPSPPTT------TPITPPTSTTTLPPTTTPSPPPTTTTTPPPT---TTPSPPTTTT 1664
Query: 638 KSHPARFCNLPPP 676
S P PPP
Sbjct: 1665 PSPPITTTTTPPP 1677
Score = 43.5 bits (101), Expect = 0.003
Identities = 47/139 (33%), Positives = 56/139 (39%), Gaps = 6/139 (4%)
Frame = +2
Query: 275 T*PLPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*AT-SPP----- 436
T P PP PT T P T +T TPPP T SPP
Sbjct: 1576 TTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTT---------TPPPTTTPSPPTTTPI 1626
Query: 437 SPPSSPTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDS 616
+PP+S T P PTT S + TT P PT + +PPT +T P P P+ +
Sbjct: 1627 TPPTSTTTLP------PTTTPSPPPTTTTTP-----PPTTTPSPPTTTT-PSP-PITTTT 1673
Query: 617 QAPPTATKSHPARFCNLPP 673
PPT T S P PP
Sbjct: 1674 TPPPTTTPSSPITTTPSPP 1692
Score = 40.4 bits (93), Expect = 0.024
Identities = 43/144 (29%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Frame = +2
Query: 275 T*PLPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*AT-SP-----P 436
T P PP P+ PT+ TL P +T TPPP T SP P
Sbjct: 1616 TTPSPPTTTPITPPTSTT-TLPPTTTPSPPPTTTT---------TPPPTTTPSPPTTTTP 1665
Query: 437 SPP--SSPTPSPSSS*SNP--TTHYSFFCSQTT-APIFLAFLPTDSNNPPTRSTHPHPCP 601
SPP ++ TP P+++ S+P TT + TT +P P + P+ +T P P P
Sbjct: 1666 SPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPP 1725
Query: 602 L*PDSQAPPTATKSHPARFCNLPP 673
+ +P T LPP
Sbjct: 1726 TTMTTPSPTTTPSPPTTTMTTLPP 1749
Score = 38.5 bits (88), Expect = 0.090
Identities = 43/139 (30%), Positives = 61/139 (42%), Gaps = 9/139 (6%)
Frame = +2
Query: 275 T*PLPPVI*-----PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPS 439
T P PP+ P P++ T T T S P + T P +T+ PS
Sbjct: 1663 TTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPS 1722
Query: 440 PPSS--PTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PD 613
PP + TPSP+++ S PTT + TT P PT +++P T T P P + P
Sbjct: 1723 PPPTTMTTPSPTTTPSPPTT------TMTTLP------PTTTSSPLT--TTPLPPSITPP 1768
Query: 614 SQAP-PTATKSHP-ARFCN 664
+ +P T T + P CN
Sbjct: 1769 TFSPFSTTTPTTPCVPLCN 1787
Score = 38.5 bits (88), Expect = 0.090
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 16/107 (14%)
Frame = +2
Query: 404 WTPPP*ATSPPSPPSSPTPSPSSS*S-NPTTHYSFFCSQTTAP-----------IFLAFL 547
W T+P P ++P+P P+++ + PTT S + TT P L
Sbjct: 1390 WPMDKCITTPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPL 1449
Query: 548 PTDSNNPPTRSTHPHPCPL*PD----SQAPPTATKSHPARFCNLPPP 676
PT + +PP +T P P + +PPT T S P PPP
Sbjct: 1450 PTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPP 1496
Score = 36.2 bits (82), Expect = 0.45
Identities = 46/163 (28%), Positives = 60/163 (36%), Gaps = 36/163 (22%)
Frame = +2
Query: 302 PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATS----PPS----PPSSPT 457
P T P T P T + P + TP P T+ PP+ PP++ T
Sbjct: 1605 PTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTT 1664
Query: 458 PSP------------------SSS*SNPTTHYSFFCSQTT--APIFLAFLP---TDSNNP 568
PSP +++ S PTT + TT +PI P T + P
Sbjct: 1665 PSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPP 1724
Query: 569 PTRSTHPHPC-----PL*PDSQAPPTATKSHPARFCNLPPPIS 682
PT T P P P + PPT T S P LPP I+
Sbjct: 1725 PTTMTTPSPTTTPSPPTTTMTTLPPTTTSS-PLTTTPLPPSIT 1766
>gb|AAA59163.1| mucin
Length = 1270
Score = 55.8 bits (133), Expect = 5e-07
Identities = 48/134 (35%), Positives = 60/134 (43%)
Frame = +2
Query: 275 T*PLPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPSPPSSP 454
T P PP+ P+ P A TL P T +T P + TP P T+P +PP+S
Sbjct: 873 TTPSPPMTTPI-TPPASTTTLPPTTTPSPPTTTTTTP---PPTTTPSPPTTTPITPPTST 928
Query: 455 TPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDSQAPPTA 634
T P PTT S + TT P PT + +PPT +T P P P + PPT
Sbjct: 929 TTLP------PTTTPSPPPTTTTTP-----PPTTTPSPPTTTT-PSP-PTITTTTPPPTT 975
Query: 635 TKSHPARFCNLPPP 676
T S P PPP
Sbjct: 976 TPSPPTTTTTTPPP 989
Score = 51.2 bits (121), Expect = 1e-05
Identities = 42/137 (30%), Positives = 57/137 (40%), Gaps = 3/137 (2%)
Frame = +2
Query: 275 T*PLPPV---I*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPSPP 445
T P PP+ P T P T P T + + T P + TP P T+P +PP
Sbjct: 827 TTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPMTTPITPP 886
Query: 446 SSPTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDSQAP 625
+S T P ++ +P T + TT P PT + +PPT + P + P
Sbjct: 887 ASTTTLPPTTTPSPPT-----TTTTTPP------PTTTPSPPTTTPITPPT---STTTLP 932
Query: 626 PTATKSHPARFCNLPPP 676
PT T S P PPP
Sbjct: 933 PTTTPSPPPTTTTTPPP 949
Score = 50.1 bits (118), Expect = 3e-05
Identities = 49/147 (33%), Positives = 59/147 (39%), Gaps = 12/147 (8%)
Frame = +2
Query: 272 IT*PLPPVI*PLQNPTAE----PDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPS 439
IT P PP P PT P T T + T P + T P T+ PS
Sbjct: 771 ITTPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPLPTTTPS 830
Query: 440 PPSSPT--PSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHP---CPL 604
PP S T P P+++ S PTT S TT P PT + P +T P P P+
Sbjct: 831 PPISTTTTPPPTTTPSPPTTTPS---PPTTTP----SPPTTTTTTPPPTTTPSPPMTTPI 883
Query: 605 *PDSQA---PPTATKSHPARFCNLPPP 676
P + PPT T S P PPP
Sbjct: 884 TPPASTTTLPPTTTPSPPTTTTTTPPP 910
Score = 49.7 bits (117), Expect = 4e-05
Identities = 43/133 (32%), Positives = 53/133 (39%), Gaps = 2/133 (1%)
Frame = +2
Query: 284 LPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPSPPSSPTPS 463
LPP P PT T P T S +T + TPPP T P ++ TP
Sbjct: 931 LPPTTTPSPPPTTT--TTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPP 988
Query: 464 PSSS*SNPTTHYSFFCSQTTAPIFLAFLP--TDSNNPPTRSTHPHPCPL*PDSQAPPTAT 637
P+++ S PTT + T P LP T + PPT +T P P P T T
Sbjct: 989 PTTTPSPPTT------TPITPPTSTTTLPPTTTPSPPPTTTTTPPPT---TTPSPPTTTT 1039
Query: 638 KSHPARFCNLPPP 676
S P PPP
Sbjct: 1040 PSPPITTTTTPPP 1052
Score = 43.5 bits (101), Expect = 0.003
Identities = 47/139 (33%), Positives = 56/139 (39%), Gaps = 6/139 (4%)
Frame = +2
Query: 275 T*PLPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*AT-SPP----- 436
T P PP PT T P T +T TPPP T SPP
Sbjct: 951 TTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTT---------TPPPTTTPSPPTTTPI 1001
Query: 437 SPPSSPTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDS 616
+PP+S T P PTT S + TT P PT + +PPT +T P P P+ +
Sbjct: 1002 TPPTSTTTLP------PTTTPSPPPTTTTTP-----PPTTTPSPPTTTT-PSP-PITTTT 1048
Query: 617 QAPPTATKSHPARFCNLPP 673
PPT T S P PP
Sbjct: 1049 TPPPTTTPSSPITTTPSPP 1067
Score = 40.4 bits (93), Expect = 0.024
Identities = 43/144 (29%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Frame = +2
Query: 275 T*PLPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*AT-SP-----P 436
T P PP P+ PT+ TL P +T TPPP T SP P
Sbjct: 991 TTPSPPTTTPITPPTSTT-TLPPTTTPSPPPTTTT---------TPPPTTTPSPPTTTTP 1040
Query: 437 SPP--SSPTPSPSSS*SNP--TTHYSFFCSQTT-APIFLAFLPTDSNNPPTRSTHPHPCP 601
SPP ++ TP P+++ S+P TT + TT +P P + P+ +T P P P
Sbjct: 1041 SPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPP 1100
Query: 602 L*PDSQAPPTATKSHPARFCNLPP 673
+ +P T LPP
Sbjct: 1101 TTMTTPSPTTTPSPPTTTMTTLPP 1124
Score = 38.5 bits (88), Expect = 0.090
Identities = 43/139 (30%), Positives = 61/139 (42%), Gaps = 9/139 (6%)
Frame = +2
Query: 275 T*PLPPVI*-----PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPS 439
T P PP+ P P++ T T T S P + T P +T+ PS
Sbjct: 1038 TTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPS 1097
Query: 440 PPSS--PTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PD 613
PP + TPSP+++ S PTT + TT P PT +++P T T P P + P
Sbjct: 1098 PPPTTMTTPSPTTTPSPPTT------TMTTLP------PTTTSSPLT--TTPLPPSITPP 1143
Query: 614 SQAP-PTATKSHP-ARFCN 664
+ +P T T + P CN
Sbjct: 1144 TFSPFSTTTPTTPCVPLCN 1162
Score = 38.5 bits (88), Expect = 0.090
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 16/107 (14%)
Frame = +2
Query: 404 WTPPP*ATSPPSPPSSPTPSPSSS*S-NPTTHYSFFCSQTTAP-----------IFLAFL 547
W T+P P ++P+P P+++ + PTT S + TT P L
Sbjct: 765 WPMDKCITTPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPL 824
Query: 548 PTDSNNPPTRSTHPHPCPL*PD----SQAPPTATKSHPARFCNLPPP 676
PT + +PP +T P P + +PPT T S P PPP
Sbjct: 825 PTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPP 871
Score = 36.2 bits (82), Expect = 0.45
Identities = 46/163 (28%), Positives = 60/163 (36%), Gaps = 36/163 (22%)
Frame = +2
Query: 302 PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATS----PPS----PPSSPT 457
P T P T P T + P + TP P T+ PP+ PP++ T
Sbjct: 980 PTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTT 1039
Query: 458 PSP------------------SSS*SNPTTHYSFFCSQTT--APIFLAFLP---TDSNNP 568
PSP +++ S PTT + TT +PI P T + P
Sbjct: 1040 PSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPP 1099
Query: 569 PTRSTHPHPC-----PL*PDSQAPPTATKSHPARFCNLPPPIS 682
PT T P P P + PPT T S P LPP I+
Sbjct: 1100 PTTMTTPSPTTTPSPPTTTMTTLPPTTTSS-PLTTTPLPPSIT 1141
>gb|AAA59875.1| mucin
Length = 573
Score = 55.5 bits (132), Expect = 7e-07
Identities = 48/134 (35%), Positives = 59/134 (43%)
Frame = +2
Query: 275 T*PLPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPSPPSSP 454
T P PP P+ P A TL P T +T P + TP P T+P +PP+S
Sbjct: 156 TTPSPPTTTPI-TPPASTTTLPPTTTPSPPTTTTTTP---PPTTTPSPPTTTPITPPTST 211
Query: 455 TPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDSQAPPTA 634
T P PTT S + TT P PT + +PPT +T P P P + PPT
Sbjct: 212 TTLP------PTTTPSPPPTTTTTP-----PPTTTPSPPTTTT-PSP-PTITTTTPPPTT 258
Query: 635 TKSHPARFCNLPPP 676
T S P PPP
Sbjct: 259 TPSPPTTTTTTPPP 272
Score = 51.6 bits (122), Expect = 1e-05
Identities = 42/137 (30%), Positives = 57/137 (40%), Gaps = 3/137 (2%)
Frame = +2
Query: 275 T*PLPPV---I*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPSPP 445
T P PP+ P T P T P T + + T P + TP P T+P +PP
Sbjct: 110 TTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPP 169
Query: 446 SSPTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDSQAP 625
+S T P ++ +P T + TT P PT + +PPT + P + P
Sbjct: 170 ASTTTLPPTTTPSPPT-----TTTTTPP------PTTTPSPPTTTPITPPT---STTTLP 215
Query: 626 PTATKSHPARFCNLPPP 676
PT T S P PPP
Sbjct: 216 PTTTPSPPPTTTTTPPP 232
Score = 51.6 bits (122), Expect = 1e-05
Identities = 51/148 (34%), Positives = 64/148 (42%), Gaps = 13/148 (8%)
Frame = +2
Query: 272 IT*PLPPVI*PLQNPTAE---PDTLDPVQETGS*TESTRRRRRWPH---SWTPPP*AT-S 430
IT P PP P PT+ P T P T + T P + TPPP T S
Sbjct: 54 ITTPSPPTTTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPS 113
Query: 431 PP-----SPPSSPTPS-PSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPH 592
PP +PP + TPS P+++ S PTT S + TT P PT + +PPT +
Sbjct: 114 PPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTP-----PPTTTPSPPTTTPITP 168
Query: 593 PCPL*PDSQAPPTATKSHPARFCNLPPP 676
P + PPT T S P PPP
Sbjct: 169 PA---STTTLPPTTTPSPPTTTTTTPPP 193
Score = 49.7 bits (117), Expect = 4e-05
Identities = 43/133 (32%), Positives = 53/133 (39%), Gaps = 2/133 (1%)
Frame = +2
Query: 284 LPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPSPPSSPTPS 463
LPP P PT T P T S +T + TPPP T P ++ TP
Sbjct: 214 LPPTTTPSPPPTTT--TTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPP 271
Query: 464 PSSS*SNPTTHYSFFCSQTTAPIFLAFLP--TDSNNPPTRSTHPHPCPL*PDSQAPPTAT 637
P+++ S PTT + T P LP T + PPT +T P P P T T
Sbjct: 272 PTTTPSPPTT------TPITPPTSTTTLPPTTTPSPPPTTTTTPPPT---TTPSPPTTTT 322
Query: 638 KSHPARFCNLPPP 676
S P PPP
Sbjct: 323 PSPPITTTTTPPP 335
Score = 45.4 bits (106), Expect = 7e-04
Identities = 45/134 (33%), Positives = 57/134 (41%), Gaps = 1/134 (0%)
Frame = +2
Query: 275 T*PLPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPSPPSSP 454
T P PP P+ PT+ TL P +T TPPP T+ PSPP++
Sbjct: 195 TTPSPPTTTPITPPTSTT-TLPPTTTPSPPPTTTT---------TPPP--TTTPSPPTTT 242
Query: 455 TPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDSQAPPTA 634
TPSP PT + TT P PT + +PPT +T P P +PPT
Sbjct: 243 TPSP------PTI------TTTTPP------PTTTPSPPTTTTTTPPPTTTP---SPPTT 281
Query: 635 TK-SHPARFCNLPP 673
T + P LPP
Sbjct: 282 TPITPPTSTTTLPP 295
Score = 43.5 bits (101), Expect = 0.003
Identities = 47/139 (33%), Positives = 56/139 (39%), Gaps = 6/139 (4%)
Frame = +2
Query: 275 T*PLPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*AT-SPP----- 436
T P PP PT T P T +T TPPP T SPP
Sbjct: 234 TTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTT---------TPPPTTTPSPPTTTPI 284
Query: 437 SPPSSPTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDS 616
+PP+S T P PTT S + TT P PT + +PPT +T P P P+ +
Sbjct: 285 TPPTSTTTLP------PTTTPSPPPTTTTTP-----PPTTTPSPPTTTT-PSP-PITTTT 331
Query: 617 QAPPTATKSHPARFCNLPP 673
PPT T S P PP
Sbjct: 332 TPPPTTTPSSPITTTPSPP 350
Score = 42.0 bits (97), Expect = 0.008
Identities = 28/91 (30%), Positives = 40/91 (43%)
Frame = +2
Query: 404 WTPPP*ATSPPSPPSSPTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRST 583
W T+P P ++P+P P+S+ + P T T +P PT + P +T
Sbjct: 48 WPMDKCITTPSPPTTTPSPPPTSTTTLPPT-------TTPSP------PTTTTTTPPPTT 94
Query: 584 HPHPCPL*PDSQAPPTATKSHPARFCNLPPP 676
P P P+ + PPT T S P PPP
Sbjct: 95 TPSP-PITTTTTPPPTTTPSPPISTTTTPPP 124
Score = 40.4 bits (93), Expect = 0.024
Identities = 43/144 (29%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Frame = +2
Query: 275 T*PLPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*AT-SP-----P 436
T P PP P+ PT+ TL P +T TPPP T SP P
Sbjct: 274 TTPSPPTTTPITPPTSTT-TLPPTTTPSPPPTTTT---------TPPPTTTPSPPTTTTP 323
Query: 437 SPP--SSPTPSPSSS*SNP--TTHYSFFCSQTT-APIFLAFLPTDSNNPPTRSTHPHPCP 601
SPP ++ TP P+++ S+P TT + TT +P P + P+ +T P P P
Sbjct: 324 SPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPP 383
Query: 602 L*PDSQAPPTATKSHPARFCNLPP 673
+ +P T LPP
Sbjct: 384 TTMTTPSPTTTPSPPTTTMTTLPP 407
Score = 38.5 bits (88), Expect = 0.090
Identities = 43/139 (30%), Positives = 61/139 (42%), Gaps = 9/139 (6%)
Frame = +2
Query: 275 T*PLPPVI*-----PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPS 439
T P PP+ P P++ T T T S P + T P +T+ PS
Sbjct: 321 TTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPS 380
Query: 440 PPSS--PTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PD 613
PP + TPSP+++ S PTT + TT P PT +++P T T P P + P
Sbjct: 381 PPPTTMTTPSPTTTPSPPTT------TMTTLP------PTTTSSPLT--TTPLPPSITPP 426
Query: 614 SQAP-PTATKSHP-ARFCN 664
+ +P T T + P CN
Sbjct: 427 TFSPFSTTTPTTPCVPLCN 445
Score = 36.2 bits (82), Expect = 0.45
Identities = 46/163 (28%), Positives = 60/163 (36%), Gaps = 36/163 (22%)
Frame = +2
Query: 302 PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATS----PPS----PPSSPT 457
P T P T P T + P + TP P T+ PP+ PP++ T
Sbjct: 263 PTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTT 322
Query: 458 PSP------------------SSS*SNPTTHYSFFCSQTT--APIFLAFLP---TDSNNP 568
PSP +++ S PTT + TT +PI P T + P
Sbjct: 323 PSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPP 382
Query: 569 PTRSTHPHPC-----PL*PDSQAPPTATKSHPARFCNLPPPIS 682
PT T P P P + PPT T S P LPP I+
Sbjct: 383 PTTMTTPSPTTTPSPPTTTMTTLPPTTTSS-PLTTTPLPPSIT 424
>ref|NP_703081.1| unknown [Rachiplusia ou multiple nucleopolyhedrovirus]
gi|23476536|gb|AAN28083.1| unknown [Rachiplusia ou
multiple nucleopolyhedrovirus]
Length = 237
Score = 51.6 bits (122), Expect = 1e-05
Identities = 41/124 (33%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Frame = +2
Query: 281 PLPPVI*PLQNPTAEPDTLDPVQETGS*TESTRRRRRWPHSWTPPP*ATSPPSP-PSSPT 457
P PP++ P +P P P T S S P P P T PP+P P +PT
Sbjct: 34 PNPPIVPPPTSPPIVPLPTPPPTPTPSPPPSPTPP---PTPIPPTPTPTPPPTPIPPTPT 90
Query: 458 PSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDSQAPPTAT 637
P+P + PT T P PT + +PP P P P P S PPT T
Sbjct: 91 PTPPPTPIPPTP--------TPTPPPSPIPPTPTPSPPPSPIPPTPTPSPPPSPIPPTPT 142
Query: 638 KSHP 649
S P
Sbjct: 143 PSPP 146
Score = 43.1 bits (100), Expect = 0.004
Identities = 38/118 (32%), Positives = 45/118 (37%), Gaps = 3/118 (2%)
Frame = +2
Query: 281 PLPPVI*PLQNPTAEPDTLDPVQETGS*TE--STRRRRRWPHSWTPPP*ATSPPSP-PSS 451
P P I PL P P P T T T P P P T PP+P P +
Sbjct: 42 PTSPPIVPLPTPPPTPTPSPPPSPTPPPTPIPPTPTPTPPPTPIPPTPTPTPPPTPIPPT 101
Query: 452 PTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPTRSTHPHPCPL*PDSQAP 625
PTP+P S PT T +P PT + +PP P P P P S +P
Sbjct: 102 PTPTPPPSPIPPTP--------TPSPPPSPIPPTPTPSPPPSPIPPTPTPSPPPSPSP 151
Score = 37.0 bits (84), Expect = 0.26
Identities = 31/93 (33%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Frame = +2
Query: 410 PPP*ATSPP-----SPPSSPTPSPSSS*SNPTTHYSFFCSQTTAPIFLAFLPTDSNNPPT 574
PPP TSPP +PP +PTPSP S + P T PI PPT
Sbjct: 40 PPP--TSPPIVPLPTPPPTPTPSPPPSPTPPPT-----------PI-----------PPT 75
Query: 575 RSTHPHPCPL*PDSQAPPTATKSHPARFCNLPP 673
+ P P P+ P P T P PP
Sbjct: 76 PTPTPPPTPIPPTPTPTPPPTPIPPTPTPTPPP 108
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 665,234,971
Number of Sequences: 1393205
Number of extensions: 17449319
Number of successful extensions: 148337
Number of sequences better than 10.0: 1097
Number of HSP's better than 10.0 without gapping: 81497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122086
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
