Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003609A_C01 KMC003609A_c01
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G86276 hypothetical protein F14L17.3 - Arabidopsis thaliana... 151 4e-52
ref|NP_563943.1| expressed protein; protein id: At1g14270.1, sup... 151 4e-52
gb|AAM65055.1| unknown [Arabidopsis thaliana] 151 4e-52
gb|AAM14026.1| unknown protein [Arabidopsis thaliana] 151 4e-52
ref|NP_487825.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 69 5e-13
>pir||G86276 hypothetical protein F14L17.3 - Arabidopsis thaliana
gi|7262668|gb|AAF43926.1|AC012188_3 Contains similarity
to a hypothetical protein from Synechocystis sp.
gb|D90914.1. [Arabidopsis thaliana]
Length = 354
Score = 151 bits (381), Expect(2) = 4e-52
Identities = 70/86 (81%), Positives = 78/86 (90%)
Frame = -2
Query: 487 FMTSLTKWVPTPVAIIISSAVFALAHLTPGEFPQLFVLGTALGVSYAQTHNLLTPITIHA 308
FM SLTKWVPTP+AIIISSA FALAH TPGEFPQLF+LG+ LG+SYAQT NL+TP+ IH
Sbjct: 268 FMVSLTKWVPTPIAIIISSAAFALAHFTPGEFPQLFILGSVLGLSYAQTRNLITPMVIHG 327
Query: 307 FWNSGVILFLTFLQLQGYDIKELLQS 230
FWNSGVIL LTFLQ+QGYDIKELLQ+
Sbjct: 328 FWNSGVILLLTFLQIQGYDIKELLQA 353
Score = 75.9 bits (185), Expect(2) = 4e-52
Identities = 36/46 (78%), Positives = 41/46 (88%)
Frame = -3
Query: 624 ETPERETDALVRLLPLIGSSNLSTACLVGIVGVLAPLLEETVFRGF 487
E PERE D+L++LLPLIGSSN+ST LVGI G+LAPLLEETVFRGF
Sbjct: 222 EAPEREVDSLMKLLPLIGSSNISTLSLVGITGILAPLLEETVFRGF 267
>ref|NP_563943.1| expressed protein; protein id: At1g14270.1, supported by cDNA:
36233. [Arabidopsis thaliana]
Length = 340
Score = 151 bits (381), Expect(2) = 4e-52
Identities = 70/86 (81%), Positives = 78/86 (90%)
Frame = -2
Query: 487 FMTSLTKWVPTPVAIIISSAVFALAHLTPGEFPQLFVLGTALGVSYAQTHNLLTPITIHA 308
FM SLTKWVPTP+AIIISSA FALAH TPGEFPQLF+LG+ LG+SYAQT NL+TP+ IH
Sbjct: 254 FMVSLTKWVPTPIAIIISSAAFALAHFTPGEFPQLFILGSVLGLSYAQTRNLITPMVIHG 313
Query: 307 FWNSGVILFLTFLQLQGYDIKELLQS 230
FWNSGVIL LTFLQ+QGYDIKELLQ+
Sbjct: 314 FWNSGVILLLTFLQIQGYDIKELLQA 339
Score = 75.9 bits (185), Expect(2) = 4e-52
Identities = 36/46 (78%), Positives = 41/46 (88%)
Frame = -3
Query: 624 ETPERETDALVRLLPLIGSSNLSTACLVGIVGVLAPLLEETVFRGF 487
E PERE D+L++LLPLIGSSN+ST LVGI G+LAPLLEETVFRGF
Sbjct: 208 EAPEREVDSLMKLLPLIGSSNISTLSLVGITGILAPLLEETVFRGF 253
>gb|AAM65055.1| unknown [Arabidopsis thaliana]
Length = 340
Score = 151 bits (381), Expect(2) = 4e-52
Identities = 70/86 (81%), Positives = 78/86 (90%)
Frame = -2
Query: 487 FMTSLTKWVPTPVAIIISSAVFALAHLTPGEFPQLFVLGTALGVSYAQTHNLLTPITIHA 308
FM SLTKWVPTP+AIIISSA FALAH TPGEFPQLF+LG+ LG+SYAQT NL+TP+ IH
Sbjct: 254 FMVSLTKWVPTPIAIIISSAAFALAHFTPGEFPQLFILGSVLGLSYAQTRNLITPMVIHG 313
Query: 307 FWNSGVILFLTFLQLQGYDIKELLQS 230
FWNSGVIL LTFLQ+QGYDIKELLQ+
Sbjct: 314 FWNSGVILLLTFLQIQGYDIKELLQA 339
Score = 75.9 bits (185), Expect(2) = 4e-52
Identities = 36/46 (78%), Positives = 41/46 (88%)
Frame = -3
Query: 624 ETPERETDALVRLLPLIGSSNLSTACLVGIVGVLAPLLEETVFRGF 487
E PERE D+L++LLPLIGSSN+ST LVGI G+LAPLLEETVFRGF
Sbjct: 208 EAPEREVDSLMKLLPLIGSSNISTLSLVGITGILAPLLEETVFRGF 253
>gb|AAM14026.1| unknown protein [Arabidopsis thaliana]
Length = 227
Score = 151 bits (381), Expect(2) = 4e-52
Identities = 70/86 (81%), Positives = 78/86 (90%)
Frame = -2
Query: 487 FMTSLTKWVPTPVAIIISSAVFALAHLTPGEFPQLFVLGTALGVSYAQTHNLLTPITIHA 308
FM SLTKWVPTP+AIIISSA FALAH TPGEFPQLF+LG+ LG+SYAQT NL+TP+ IH
Sbjct: 141 FMVSLTKWVPTPIAIIISSAAFALAHFTPGEFPQLFILGSVLGLSYAQTRNLITPMVIHG 200
Query: 307 FWNSGVILFLTFLQLQGYDIKELLQS 230
FWNSGVIL LTFLQ+QGYDIKELLQ+
Sbjct: 201 FWNSGVILLLTFLQIQGYDIKELLQA 226
Score = 75.9 bits (185), Expect(2) = 4e-52
Identities = 36/46 (78%), Positives = 41/46 (88%)
Frame = -3
Query: 624 ETPERETDALVRLLPLIGSSNLSTACLVGIVGVLAPLLEETVFRGF 487
E PERE D+L++LLPLIGSSN+ST LVGI G+LAPLLEETVFRGF
Sbjct: 95 EAPEREVDSLMKLLPLIGSSNISTLSLVGITGILAPLLEETVFRGF 140
>ref|NP_487825.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25365094|pir||AB2279
hypothetical protein all3785 [imported] - Nostoc sp.
(strain PCC 7120) gi|17132919|dbj|BAB75484.1|
ORF_ID:all3785~hypothetical protein [Nostoc sp. PCC
7120]
Length = 528
Score = 69.3 bits (168), Expect(2) = 5e-13
Identities = 34/72 (47%), Positives = 47/72 (65%)
Frame = -2
Query: 484 MTSLTKWVPTPVAIIISSAVFALAHLTPGEFPQLFVLGTALGVSYAQTHNLLTPITIHAF 305
+ SLT+++P AII S+ +FA+AHL+ E L LG LGV Y ++ NLL PI +H+
Sbjct: 453 LPSLTRYIPVWGAIIASAVLFAVAHLSLSEILPLTALGIVLGVVYTRSRNLLAPILLHSL 512
Query: 304 WNSGVILFLTFL 269
WNSG +L L L
Sbjct: 513 WNSGTLLSLFLL 524
Score = 26.6 bits (57), Expect(2) = 5e-13
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 528 VLAPLLEETVFRGFL*LP*LNGFL 457
+ APL EE +FRGFL LP L ++
Sbjct: 438 IAAPLFEEVLFRGFL-LPSLTRYI 460
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,155,175
Number of Sequences: 1393205
Number of extensions: 11005662
Number of successful extensions: 37228
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 35613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37173
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
