Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003608A_C01 KMC003608A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42331.1| unknown protein [Arabidopsis thaliana] 154 7e-37
ref|NP_175288.1| unknown protein; protein id: At1g48550.1 [Arabi... 154 7e-37
pir||C96525 protein T1N15.17 [imported] - Arabidopsis thaliana g... 134 7e-31
ref|NP_031860.1| Down syndrome critical region protein A; Down s... 70 1e-11
ref|NP_006043.1| Down syndrome critical region protein 3; Down s... 69 3e-11
>dbj|BAC42331.1| unknown protein [Arabidopsis thaliana]
Length = 327
Score = 154 bits (388), Expect = 7e-37
Identities = 73/101 (72%), Positives = 88/101 (86%)
Frame = -2
Query: 494 RVESVLFGEKIVNETSLIQTTQIADGDVCRNLTLPIYVILPRLLTCPTIYAGPFSIEFKV 315
RVES++ GE+IV ETSLIQ+TQIADGDVCRN+TLPIYV+LPRLL CP+++AGPFS+EFKV
Sbjct: 223 RVESIIVGERIVTETSLIQSTQIADGDVCRNMTLPIYVLLPRLLMCPSVFAGPFSVEFKV 282
Query: 314 AIVISFQSELAKLPRKSDSRTPRLWLAMETLPLELVRSK*D 192
I ISF+S+LAK KSD PRLW+A+E LPLELVR+K D
Sbjct: 283 CITISFKSKLAKAQPKSDPTAPRLWMALERLPLELVRTKRD 323
>ref|NP_175288.1| unknown protein; protein id: At1g48550.1 [Arabidopsis thaliana]
Length = 327
Score = 154 bits (388), Expect = 7e-37
Identities = 73/101 (72%), Positives = 88/101 (86%)
Frame = -2
Query: 494 RVESVLFGEKIVNETSLIQTTQIADGDVCRNLTLPIYVILPRLLTCPTIYAGPFSIEFKV 315
RVES++ GE+IV ETSLIQ+TQIADGDVCRN+TLPIYV+LPRLL CP+++AGPFS+EFKV
Sbjct: 223 RVESIIVGERIVTETSLIQSTQIADGDVCRNMTLPIYVLLPRLLMCPSVFAGPFSVEFKV 282
Query: 314 AIVISFQSELAKLPRKSDSRTPRLWLAMETLPLELVRSK*D 192
I ISF+S+LAK KSD PRLW+A+E LPLELVR+K D
Sbjct: 283 CITISFKSKLAKAQPKSDPTAPRLWMALERLPLELVRTKRD 323
>pir||C96525 protein T1N15.17 [imported] - Arabidopsis thaliana
gi|8778704|gb|AAF79712.1|AC020889_20 T1N15.17
[Arabidopsis thaliana]
Length = 460
Score = 134 bits (336), Expect = 7e-31
Identities = 62/86 (72%), Positives = 75/86 (87%)
Frame = -2
Query: 494 RVESVLFGEKIVNETSLIQTTQIADGDVCRNLTLPIYVILPRLLTCPTIYAGPFSIEFKV 315
RVES++ GE+IV ETSLIQ+TQIADGDVCRN+TLPIYV+LPRLL CP+++AGPFS+EFKV
Sbjct: 241 RVESIIVGERIVTETSLIQSTQIADGDVCRNMTLPIYVLLPRLLMCPSVFAGPFSVEFKV 300
Query: 314 AIVISFQSELAKLPRKSDSRTPRLWL 237
I ISF+S+LAK KSD PRLW+
Sbjct: 301 CITISFKSKLAKAQPKSDPTAPRLWV 326
>ref|NP_031860.1| Down syndrome critical region protein A; Down syndrome critical
region gene a [Mus musculus]
gi|3334162|sp|O35075|DSR3_MOUSE Down syndrome critical
region protein 3 homolog (Down syndrome critical region
protein A homolog) gi|7513635|pir||JC5699 Down syndrome
critical protein A - mouse gi|2588993|dbj|BAA23270.1|
Dcra [Mus musculus] gi|13277666|gb|AAH03740.1| Down
syndrome critical region gene a [Mus musculus]
gi|26346346|dbj|BAC36824.1| unnamed protein product [Mus
musculus] gi|26346520|dbj|BAC36911.1| unnamed protein
product [Mus musculus]
Length = 297
Score = 70.1 bits (170), Expect = 1e-11
Identities = 30/69 (43%), Positives = 46/69 (66%)
Frame = -2
Query: 494 RVESVLFGEKIVNETSLIQTTQIADGDVCRNLTLPIYVILPRLLTCPTIYAGPFSIEFKV 315
RVE+ E + + IQ QIADGD+CRNL++P+Y++ PRL TCPT+ F +EF+V
Sbjct: 215 RVETCGCAEGYARDATEIQNIQIADGDICRNLSVPLYMVFPRLFTCPTLETTNFKVEFEV 274
Query: 314 AIVISFQSE 288
+V+ ++
Sbjct: 275 NVVVLLHAD 283
>ref|NP_006043.1| Down syndrome critical region protein 3; Down syndrome critical
region protein A [Homo sapiens]
gi|3334161|sp|O14972|DSR3_HUMAN Down syndrome critical
region protein 3 (Down syndrome critical region protein
A) gi|2589160|dbj|BAA23225.1| DCRA [Homo sapiens]
Length = 297
Score = 68.9 bits (167), Expect = 3e-11
Identities = 32/64 (50%), Positives = 43/64 (67%)
Frame = -2
Query: 494 RVESVLFGEKIVNETSLIQTTQIADGDVCRNLTLPIYVILPRLLTCPTIYAGPFSIEFKV 315
RVE+ E + + IQ QIADGDVCR L++PIY++ PRL TCPT+ F +EF+V
Sbjct: 215 RVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEV 274
Query: 314 AIVI 303
IV+
Sbjct: 275 NIVV 278
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,000,820
Number of Sequences: 1393205
Number of extensions: 8074757
Number of successful extensions: 19132
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19131
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
