Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003605A_C01 KMC003605A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198893.1| prohibitin (gb|AAC49691.1); protein id: At5g407... 146 2e-34
ref|NP_189364.1| prohibitin, putative; protein id: At3g27280.1, ... 144 6e-34
gb|AAO23637.1| At3g27280 [Arabidopsis thaliana] 144 6e-34
pir||T03843 prohibitin - common tobacco gi|1946329|gb|AAC49690.1... 144 6e-34
gb|AAM64845.1| prohibitin, putative [Arabidopsis thaliana] 144 6e-34
>ref|NP_198893.1| prohibitin (gb|AAC49691.1); protein id: At5g40770.1, supported by
cDNA: 37298., supported by cDNA: gi_15450837, supported
by cDNA: gi_1946330, supported by cDNA: gi_4097691
[Arabidopsis thaliana] gi|1946331|gb|AAC49691.1|
prohibitin [Arabidopsis thaliana]
gi|4097692|gb|AAD00157.1| prohibitin 3
gi|9758371|dbj|BAB08838.1| prohibitin [Arabidopsis
thaliana] gi|15450838|gb|AAK96690.1| prohibitin
[Arabidopsis thaliana] gi|21387093|gb|AAM47950.1|
prohibitin [Arabidopsis thaliana]
gi|21593231|gb|AAM65180.1| prohibitin [Arabidopsis
thaliana]
Length = 277
Score = 146 bits (368), Expect = 2e-34
Identities = 76/87 (87%), Positives = 83/87 (95%)
Frame = -3
Query: 559 SRAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESEAAKLISDATAAVGMGLIELR 380
SRAVEQKQVAQQEAERSKFVVMKA+QERRAA+IRAEGESEAA+LISDATA GMGLIELR
Sbjct: 185 SRAVEQKQVAQQEAERSKFVVMKADQERRAAVIRAEGESEAAQLISDATAKAGMGLIELR 244
Query: 379 MIEASREIAATLAKSPNVSYLPGGNNM 299
IEASREIA+TLA+SPNV+YLPGG +M
Sbjct: 245 RIEASREIASTLARSPNVAYLPGGQSM 271
>ref|NP_189364.1| prohibitin, putative; protein id: At3g27280.1, supported by cDNA:
33731. [Arabidopsis thaliana] gi|9294221|dbj|BAB02123.1|
prohibitin [Arabidopsis thaliana]
Length = 279
Score = 144 bits (364), Expect = 6e-34
Identities = 75/87 (86%), Positives = 82/87 (94%)
Frame = -3
Query: 559 SRAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESEAAKLISDATAAVGMGLIELR 380
SRAVE KQVAQQEAERSKFVVMKA+QERRAA+IRAEGESEAA+LISDATA GMGLIELR
Sbjct: 185 SRAVEAKQVAQQEAERSKFVVMKADQERRAAVIRAEGESEAAQLISDATAKAGMGLIELR 244
Query: 379 MIEASREIAATLAKSPNVSYLPGGNNM 299
IEASRE+AATLA+SPNV+YLPGG +M
Sbjct: 245 RIEASREVAATLARSPNVAYLPGGQSM 271
>gb|AAO23637.1| At3g27280 [Arabidopsis thaliana]
Length = 279
Score = 144 bits (364), Expect = 6e-34
Identities = 75/87 (86%), Positives = 82/87 (94%)
Frame = -3
Query: 559 SRAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESEAAKLISDATAAVGMGLIELR 380
SRAVE KQVAQQEAERSKFVVMKA+QERRAA+IRAEGESEAA+LISDATA GMGLIELR
Sbjct: 185 SRAVEAKQVAQQEAERSKFVVMKADQERRAAVIRAEGESEAAQLISDATAKAGMGLIELR 244
Query: 379 MIEASREIAATLAKSPNVSYLPGGNNM 299
IEASRE+AATLA+SPNV+YLPGG +M
Sbjct: 245 RIEASREVAATLARSPNVAYLPGGQSM 271
>pir||T03843 prohibitin - common tobacco gi|1946329|gb|AAC49690.1| prohibitin
[Nicotiana tabacum]
Length = 279
Score = 144 bits (364), Expect = 6e-34
Identities = 76/87 (87%), Positives = 82/87 (93%)
Frame = -3
Query: 559 SRAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESEAAKLISDATAAVGMGLIELR 380
S+AVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESE+AKLISDATAA GMGLIELR
Sbjct: 185 SKAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESESAKLISDATAAAGMGLIELR 244
Query: 379 MIEASREIAATLAKSPNVSYLPGGNNM 299
IEASRE+AAT+AK+PNV+YLP NM
Sbjct: 245 RIEASREVAATMAKTPNVAYLPKQGNM 271
>gb|AAM64845.1| prohibitin, putative [Arabidopsis thaliana]
Length = 279
Score = 144 bits (364), Expect = 6e-34
Identities = 75/87 (86%), Positives = 82/87 (94%)
Frame = -3
Query: 559 SRAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESEAAKLISDATAAVGMGLIELR 380
SRAVE KQVAQQEAERSKFVVMKA+QERRAA+IRAEGESEAA+LISDATA GMGLIELR
Sbjct: 185 SRAVEAKQVAQQEAERSKFVVMKADQERRAAVIRAEGESEAAQLISDATAKAGMGLIELR 244
Query: 379 MIEASREIAATLAKSPNVSYLPGGNNM 299
IEASRE+AATLA+SPNV+YLPGG +M
Sbjct: 245 RIEASREVAATLARSPNVAYLPGGQSM 271
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,859,093
Number of Sequences: 1393205
Number of extensions: 10767801
Number of successful extensions: 48183
Number of sequences better than 10.0: 501
Number of HSP's better than 10.0 without gapping: 38727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45834
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
