Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003604A_C01 KMC003604A_c01
(671 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P48724|IF5_PHAVU Eukaryotic translation initiation factor 5 (... 187 1e-46
ref|NP_177907.1| eukaryotic initiation factor 5 (eIF-5), putativ... 143 2e-33
ref|NP_174877.1| Eukaryotic translation initiation factor 5, put... 127 1e-28
gb|AAL07057.1| putative eukaryotic translation initiation factor... 127 1e-28
emb|CAA10616.1| eukaryotic translation initiation factor 5 [Zea ... 120 2e-26
>sp|P48724|IF5_PHAVU Eukaryotic translation initiation factor 5 (eIF-5)
gi|7488764|pir||T11804 translation initiation factor
eIF-5 [imported] - kidney bean gi|1008881|gb|AAA92861.1|
eukaryotic initiation factor 5
Length = 443
Score = 187 bits (475), Expect = 1e-46
Identities = 94/124 (75%), Positives = 106/124 (84%)
Frame = -3
Query: 669 LPASAQEKMSALYEALSEGTEKGFAKVAIKRKSYLAAAVSQEEGMQLPLLHAIEEFSCKS 490
LP AQEKMSAL EAL EGTEKGF + +K+K+Y AAAV+ EEG Q+ LLHAIEEF CK
Sbjct: 321 LPVPAQEKMSALVEALFEGTEKGFGRETLKKKNYFAAAVA-EEGSQILLLHAIEEFCCKP 379
Query: 489 TSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKDSQIWKNVKPFVDWLQSAESE 310
SNALKEVALVLK LYDADVLEEE IV WYQKGLKGDNK+S+IWKN +PF+DWLQ+AESE
Sbjct: 380 NSNALKEVALVLKTLYDADVLEEEAIVLWYQKGLKGDNKNSKIWKNAQPFIDWLQNAESE 439
Query: 309 SEEE 298
S+EE
Sbjct: 440 SDEE 443
>ref|NP_177907.1| eukaryotic initiation factor 5 (eIF-5), putative; protein id:
At1g77840.1, supported by cDNA: gi_17065235, supported
by cDNA: gi_17473618 [Arabidopsis thaliana]
gi|28380089|sp|Q9S825|IF5Z_ARATH Probable eukaryotic
translation initiation factor 5-2 (eIF-5 2)
gi|6573756|gb|AAF17676.1|AC009243_3 F28K19.5
[Arabidopsis thaliana]
gi|12323296|gb|AAG51628.1|AC012193_10 putative
eukaryotic translation initiation factor 5; 76444-77757
[Arabidopsis thaliana] gi|17065236|gb|AAL32772.1|
putative eukaryotic translation initiation factor 5
[Arabidopsis thaliana] gi|17473619|gb|AAL38273.1|
putative eukaryotic translation initiation factor 5
[Arabidopsis thaliana] gi|21387159|gb|AAM47983.1|
putative eukaryotic translation initiation factor 5
[Arabidopsis thaliana] gi|25084097|gb|AAN72174.1|
putative eukaryotic translation initiation factor 5
[Arabidopsis thaliana]
Length = 437
Score = 143 bits (360), Expect = 2e-33
Identities = 74/121 (61%), Positives = 93/121 (76%), Gaps = 2/121 (1%)
Frame = -3
Query: 654 QEKMSALYEALSEGTEKGFAKVAIKRKSYLAAAVS-QEEGMQLPLLHAIEEFSCKS-TSN 481
Q+ M AL+ AL +G KGFAK K+K+YLAAA + QE+G Q+ LL++I F K+
Sbjct: 316 QDIMDALFNALFDGVGKGFAKEVTKKKNYLAAAATMQEDGSQMHLLNSIGTFCGKNGNEE 375
Query: 480 ALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKDSQIWKNVKPFVDWLQSAESESEE 301
ALKEVALVLKALYD D++EEE ++ WY+KGL G +K S +WKNVKPFV+WLQSAESESEE
Sbjct: 376 ALKEVALVLKALYDQDIIEEEVVLDWYEKGLTGADKSSPVWKNVKPFVEWLQSAESESEE 435
Query: 300 E 298
E
Sbjct: 436 E 436
>ref|NP_174877.1| Eukaryotic translation initiation factor 5, putative; protein id:
At1g36730.1, supported by cDNA: gi_15810338, supported
by cDNA: gi_17381209, supported by cDNA: gi_20465814
[Arabidopsis thaliana] gi|28380080|sp|Q9C8F1|IF5Y_ARATH
Probable eukaryotic translation initiation factor 5-1
(eIF-5 1) gi|25511698|pir||C86487 probable eukaryotic
translation initiation factor 5 - Arabidopsis thaliana
gi|12322505|gb|AAG51259.1|AC025782_4 Eukaryotic
translation initiation factor 5, putative [Arabidopsis
thaliana] gi|17381210|gb|AAL36417.1| putative Eukaryotic
translation initiation factor 5 [Arabidopsis thaliana]
gi|20465815|gb|AAM20012.1| putative eukaryotic
translation initiation factor 5 protein [Arabidopsis
thaliana]
Length = 439
Score = 127 bits (320), Expect = 1e-28
Identities = 68/126 (53%), Positives = 88/126 (68%), Gaps = 4/126 (3%)
Frame = -3
Query: 663 ASAQEKMSALYEALSEGTEKGFAKVAIKRKSYLAAAVSQEEGM----QLPLLHAIEEFSC 496
A+ QEKM AL+ AL GT KGFAK IK+K YL A + +E Q+ LL+ IE F
Sbjct: 318 ANPQEKMDALFSALFGGTGKGFAKEVIKKKKYLLALMMMQEEAGAPAQMGLLNGIESFCM 377
Query: 495 KSTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKDSQIWKNVKPFVDWLQSAE 316
K+++ A KEVALV+K LYD D+L+E+ IV+WY KG+ K S + KNV PF++WLQ+AE
Sbjct: 378 KASAEAAKEVALVIKGLYDEDILDEDVIVEWYNKGV----KSSPVLKNVTPFIEWLQNAE 433
Query: 315 SESEEE 298
SESEEE
Sbjct: 434 SESEEE 439
>gb|AAL07057.1| putative eukaryotic translation initiation factor 5 [Arabidopsis
thaliana]
Length = 439
Score = 127 bits (320), Expect = 1e-28
Identities = 68/126 (53%), Positives = 88/126 (68%), Gaps = 4/126 (3%)
Frame = -3
Query: 663 ASAQEKMSALYEALSEGTEKGFAKVAIKRKSYLAAAVSQEEGM----QLPLLHAIEEFSC 496
A+ QEKM AL+ AL GT KGFAK IK+K YL A + +E Q+ LL+ IE F
Sbjct: 318 ANPQEKMDALFSALFGGTGKGFAKEVIKKKKYLLALMMMQEEAGAPAQMGLLNGIESFCM 377
Query: 495 KSTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKDSQIWKNVKPFVDWLQSAE 316
K+++ A KEVALV+K LYD D+L+E+ IV+WY KG+ K S + KNV PF++WLQ+AE
Sbjct: 378 KASAEAAKEVALVIKGLYDEDILDEDVIVEWYNKGV----KSSPVLKNVTPFIEWLQNAE 433
Query: 315 SESEEE 298
SESEEE
Sbjct: 434 SESEEE 439
>emb|CAA10616.1| eukaryotic translation initiation factor 5 [Zea mays]
Length = 451
Score = 120 bits (301), Expect = 2e-26
Identities = 66/117 (56%), Positives = 78/117 (66%)
Frame = -3
Query: 654 QEKMSALYEALSEGTEKGFAKVAIKRKSYLAAAVSQEEGMQLPLLHAIEEFSCKSTSNAL 475
Q+ M+AL EAL G KGF K +K K YLA AV +EG Q L+ AIE F K AL
Sbjct: 333 QDVMNALLEALFGGVGKGFTKEVVKNKKYLAVAVP-DEGAQTLLVQAIEAFGGKCNPEAL 391
Query: 474 KEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKDSQIWKNVKPFVDWLQSAESESE 304
KEV +VLKALYD D+L+EE IV WY + KDSQ+ KN KPFV+WLQSAES+ E
Sbjct: 392 KEVPVVLKALYDGDILDEETIVDWYNDAVAA-GKDSQVVKNAKPFVEWLQSAESDEE 447
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,409,258
Number of Sequences: 1393205
Number of extensions: 11968935
Number of successful extensions: 41714
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 38537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41326
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
