Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003603A_C01 KMC003603A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF91445.1|AF281652_1 putative DNA binding protein [Atriplex ... 152 3e-36
pir||T02069 probable DNA-binding protein GBP16 - rice gi|2511541... 135 2e-31
gb|AAK25936.1|AF360226_1 putative nuclear DNA-binding protein G2... 127 7e-29
ref|NP_190748.1| putative nuclear DNA-binding protein G2p; prote... 127 7e-29
sp|Q9UQ80|P2G4_HUMAN Proliferation-associated protein 2G4 (Cell ... 79 5e-14
>gb|AAF91445.1|AF281652_1 putative DNA binding protein [Atriplex hortensis]
Length = 397
Score = 152 bits (384), Expect = 3e-36
Identities = 74/99 (74%), Positives = 87/99 (87%), Gaps = 9/99 (9%)
Frame = -2
Query: 541 HELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHPLQELQTTKTVEDPEIKAWLAL 362
H+LLQPYPVL+EKPGDYVAHIKFTVLLMPNGSDR+TS+P+QELQ TK+++DPEIKAWLAL
Sbjct: 296 HDLLQPYPVLYEKPGDYVAHIKFTVLLMPNGSDRVTSYPVQELQPTKSIDDPEIKAWLAL 355
Query: 361 GTKSKKKGGGKKKKGKKG--------AEAEPVE-ATNGA 272
GTK+KKKGGGKKKK KKG A+AEP++ + NGA
Sbjct: 356 GTKTKKKGGGKKKKAKKGEKSGAEESADAEPMDTSANGA 394
>pir||T02069 probable DNA-binding protein GBP16 - rice gi|2511541|gb|AAB80919.1|
DNA-binding protein GBP16 [Oryza sativa]
Length = 393
Score = 135 bits (341), Expect = 2e-31
Identities = 67/97 (69%), Positives = 77/97 (79%), Gaps = 1/97 (1%)
Frame = -2
Query: 541 HELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHPLQELQTTKTVED-PEIKAWLA 365
HELLQPYPVLHEKPGD VAHIKFTVLL+P+GS R+TSH LQ LQ TK++ED EIKAWLA
Sbjct: 297 HELLQPYPVLHEKPGDLVAHIKFTVLLLPSGSQRVTSHSLQVLQPTKSIEDHAEIKAWLA 356
Query: 364 LGTKSKKKGGGKKKKGKKGAEAEPVEATNGATPQEQD 254
LGTK+KKK G +KKKGKKG AE V G+ ++
Sbjct: 357 LGTKTKKKSGAQKKKGKKGDAAEAVPMEEGSNDANKE 393
>gb|AAK25936.1|AF360226_1 putative nuclear DNA-binding protein G2p [Arabidopsis thaliana]
gi|14532886|gb|AAK64125.1| putative nuclear DNA-binding
protein G2p [Arabidopsis thaliana]
Length = 392
Score = 127 bits (320), Expect = 7e-29
Identities = 70/97 (72%), Positives = 78/97 (80%), Gaps = 7/97 (7%)
Frame = -2
Query: 541 HELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHPLQELQTTKTVEDPEIKAWLAL 362
H LQPYPVL+EKPGD+VA IKFTVLLMPNGSDRITSH LQEL KT+EDPEIK WLAL
Sbjct: 296 HGHLQPYPVLYEKPGDFVAQIKFTVLLMPNGSDRITSHTLQEL-PKKTIEDPEIKGWLAL 354
Query: 361 GTKSKKKGGGKKKK----GKKG---AEAEPVEATNGA 272
G K KKKGGGKKKK G+KG EAEP++A++ A
Sbjct: 355 GIK-KKKGGGKKKKAQKAGEKGEASTEAEPMDASSNA 390
>ref|NP_190748.1| putative nuclear DNA-binding protein G2p; protein id: At3g51800.1,
supported by cDNA: gi_13430627, supported by cDNA:
gi_14532885, supported by cDNA: gi_1657616, supported by
cDNA: gi_21307810, supported by cDNA: gi_21311298
[Arabidopsis thaliana] gi|11279169|pir||T51151 probable
nuclear DNA-binding protein G2p [imported] - Arabidopsis
thaliana gi|1657617|gb|AAB18127.1| G2p [Arabidopsis
thaliana] gi|3068707|gb|AAC14407.1| putative nuclear
DNA-binding protein G2p [Arabidopsis thaliana]
gi|21307811|gb|AAL25197.1| nuclear DNA-binding protein
[Arabidopsis thaliana] gi|21307813|gb|AAL25198.1|
nuclear DNA-binding protein [Arabidopsis thaliana]
gi|21311299|gb|AAM46648.1|AF422841_1 cell cycle-related
nuclear binding protein [Arabidopsis thaliana]
gi|23297076|gb|AAN13085.1| putative nuclear DNA-binding
protein G2p [Arabidopsis thaliana]
Length = 392
Score = 127 bits (320), Expect = 7e-29
Identities = 70/97 (72%), Positives = 78/97 (80%), Gaps = 7/97 (7%)
Frame = -2
Query: 541 HELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHPLQELQTTKTVEDPEIKAWLAL 362
H LQPYPVL+EKPGD+VA IKFTVLLMPNGSDRITSH LQEL KT+EDPEIK WLAL
Sbjct: 296 HGHLQPYPVLYEKPGDFVAQIKFTVLLMPNGSDRITSHTLQEL-PKKTIEDPEIKGWLAL 354
Query: 361 GTKSKKKGGGKKKK----GKKG---AEAEPVEATNGA 272
G K KKKGGGKKKK G+KG EAEP++A++ A
Sbjct: 355 GIK-KKKGGGKKKKAQKAGEKGEASTEAEPMDASSNA 390
>sp|Q9UQ80|P2G4_HUMAN Proliferation-associated protein 2G4 (Cell cycle protein p38-2G4
homolog) (hG4-1) gi|4160449|gb|AAD05561.1| cell cycle
protein [Homo sapiens]
gi|12804995|gb|AAH01951.1|AAH01951
proliferation-associated 2G4, 38kD [Homo sapiens]
gi|14043147|gb|AAH07561.1|AAH07561 Unknown (protein for
MGC:15488) [Homo sapiens]
Length = 394
Score = 78.6 bits (192), Expect = 5e-14
Identities = 48/98 (48%), Positives = 62/98 (62%), Gaps = 2/98 (2%)
Frame = -2
Query: 541 HELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHPLQE--LQTTKTVEDPEIKAWL 368
HELLQP+ VL+EK G++VA KFTVLLMPNG RITS P + ++ V+D E+KA L
Sbjct: 299 HELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKA-L 357
Query: 367 ALGTKSKKKGGGKKKKGKKGAEAEPVEATNGATPQEQD 254
+ S+K KKKK K AE AT+G T +E +
Sbjct: 358 LQSSASRKTQKKKKKKASKTAE----NATSGETLEENE 391
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,359,509
Number of Sequences: 1393205
Number of extensions: 10287007
Number of successful extensions: 32689
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 30366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32325
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
