Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003602A_C01 KMC003602A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174260.1| lipase/hydrolase, putative; protein id: At1g296... 76 4e-13
gb|AAM64368.1| lipase/hydrolase, putative [Arabidopsis thaliana] 76 4e-13
pir||T05034 hypothetical protein F13C5.140 - Arabidopsis thalian... 72 6e-12
ref|NP_567570.1| Expressed protein; protein id: At4g18970.1, sup... 72 6e-12
gb|AAM63021.1| GDSL-motif lipase/hydrolase-like protein [Arabido... 72 6e-12
>ref|NP_174260.1| lipase/hydrolase, putative; protein id: At1g29670.1, supported by
cDNA: 23556., supported by cDNA: gi_18086454
[Arabidopsis thaliana] gi|25336248|pir||A86420 probable
lipase/hydrolase, 118270-120144 [imported] - Arabidopsis
thaliana gi|12323546|gb|AAG51758.1|AC068667_37
lipase/hydrolase, putative; 118270-120144 [Arabidopsis
thaliana] gi|18086455|gb|AAL57681.1| At1g29670/F15D2_22
[Arabidopsis thaliana]
Length = 363
Score = 75.9 bits (185), Expect = 4e-13
Identities = 37/96 (38%), Positives = 54/96 (55%), Gaps = 8/96 (8%)
Frame = -3
Query: 590 NSKYVFINTTAIIHDKSQ-----GFTVTEKVCCPTNKDG---VCNPDQTPCQNRNEYVFW 435
++K+++IN I D GF VT CC ++ C P Q PC++RN YVFW
Sbjct: 267 DAKFIYINAYGIFQDMITNPARFGFRVTNAGCCGIGRNAGQITCLPGQRPCRDRNAYVFW 326
Query: 434 DGIHSTEAANLVTATISYSTSNTAIAHPTNIKKLVQ 327
D H TEAAN++ A SY+ + + A+P +I +L Q
Sbjct: 327 DAFHPTEAANVIIARRSYNAQSASDAYPMDISRLAQ 362
>gb|AAM64368.1| lipase/hydrolase, putative [Arabidopsis thaliana]
Length = 363
Score = 75.9 bits (185), Expect = 4e-13
Identities = 37/96 (38%), Positives = 54/96 (55%), Gaps = 8/96 (8%)
Frame = -3
Query: 590 NSKYVFINTTAIIHDKSQ-----GFTVTEKVCCPTNKDG---VCNPDQTPCQNRNEYVFW 435
++K+++IN I D GF VT CC ++ C P Q PC++RN YVFW
Sbjct: 267 DAKFIYINAYGIFQDMITNPARFGFRVTNAGCCGIGRNAGQITCLPGQRPCRDRNAYVFW 326
Query: 434 DGIHSTEAANLVTATISYSTSNTAIAHPTNIKKLVQ 327
D H TEAAN++ A SY+ + + A+P +I +L Q
Sbjct: 327 DAFHPTEAANVIIARRSYNAQSASDAYPMDISRLAQ 362
>pir||T05034 hypothetical protein F13C5.140 - Arabidopsis thaliana
gi|2832625|emb|CAA16754.1| putative protein [Arabidopsis
thaliana] gi|7268691|emb|CAB78899.1| putative protein
[Arabidopsis thaliana]
Length = 626
Score = 72.0 bits (175), Expect = 6e-12
Identities = 36/95 (37%), Positives = 51/95 (52%), Gaps = 8/95 (8%)
Frame = -3
Query: 587 SKYVFINTTAIIHD-----KSQGFTVTEKVCCPTNKDG---VCNPDQTPCQNRNEYVFWD 432
+K+ +IN I D GF VT CC ++ C P Q PC NR+EYVFWD
Sbjct: 531 AKFTYINAYGIFQDMVANPSRYGFRVTNAGCCGVGRNNGQITCLPGQAPCLNRDEYVFWD 590
Query: 431 GIHSTEAANLVTATISYSTSNTAIAHPTNIKKLVQ 327
H EAAN+V + S+ + + AHP +I++L +
Sbjct: 591 AFHPGEAANVVIGSRSFQRESASDAHPYDIQQLAR 625
>ref|NP_567570.1| Expressed protein; protein id: At4g18970.1, supported by cDNA:
42850., supported by cDNA: gi_16604576, supported by
cDNA: gi_21281049 [Arabidopsis thaliana]
gi|16604577|gb|AAL24090.1| unknown protein [Arabidopsis
thaliana] gi|21281050|gb|AAM44998.1| unknown protein
[Arabidopsis thaliana]
Length = 361
Score = 72.0 bits (175), Expect = 6e-12
Identities = 36/95 (37%), Positives = 51/95 (52%), Gaps = 8/95 (8%)
Frame = -3
Query: 587 SKYVFINTTAIIHD-----KSQGFTVTEKVCCPTNKDG---VCNPDQTPCQNRNEYVFWD 432
+K+ +IN I D GF VT CC ++ C P Q PC NR+EYVFWD
Sbjct: 266 AKFTYINAYGIFQDMVANPSRYGFRVTNAGCCGVGRNNGQITCLPGQAPCLNRDEYVFWD 325
Query: 431 GIHSTEAANLVTATISYSTSNTAIAHPTNIKKLVQ 327
H EAAN+V + S+ + + AHP +I++L +
Sbjct: 326 AFHPGEAANVVIGSRSFQRESASDAHPYDIQQLAR 360
>gb|AAM63021.1| GDSL-motif lipase/hydrolase-like protein [Arabidopsis thaliana]
Length = 362
Score = 72.0 bits (175), Expect = 6e-12
Identities = 37/94 (39%), Positives = 49/94 (51%), Gaps = 8/94 (8%)
Frame = -3
Query: 590 NSKYVFINTTAIIHD-----KSQGFTVTEKVCCPTNKDG---VCNPDQTPCQNRNEYVFW 435
++K+ +IN I D GF VT CC ++ C P Q PC NRNEYVFW
Sbjct: 266 DAKFTYINAYGIFQDIITNPARYGFRVTNAGCCGVGRNNGQITCLPGQAPCLNRNEYVFW 325
Query: 434 DGIHSTEAANLVTATISYSTSNTAIAHPTNIKKL 333
D H EAAN+V S+ + AHP +I++L
Sbjct: 326 DAFHPGEAANIVIGRRSFKREAASNAHPYDIQQL 359
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,350,788
Number of Sequences: 1393205
Number of extensions: 9558471
Number of successful extensions: 20060
Number of sequences better than 10.0: 184
Number of HSP's better than 10.0 without gapping: 19508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20037
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
