Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003601A_C01 KMC003601A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA72486.1| peroxidase ATP25a [Arabidopsis thaliana] 74 2e-12
ref|NP_179828.1| putative peroxidase; protein id: At2g22420.1, s... 74 2e-12
gb|AAL93152.1|AF485266_1 gaiacol peroxidase [Gossypium hirsutum] 71 8e-12
ref|NP_193362.1| peroxidase family; protein id: At4g16270.1 [Ara... 55 4e-07
sp|O23474|PE40_ARATH Peroxidase 40 precursor (Atperox P40) 55 4e-07
>emb|CAA72486.1| peroxidase ATP25a [Arabidopsis thaliana]
Length = 103
Score = 73.6 bits (179), Expect = 2e-12
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = -3
Query: 535 TLFTFPKTRGLVRFYSTHQSQFFEAFAEGMLKMGDLQSGRPGEVRRNCRMVNARRAHLL 359
TL+T TR V+ +S Q +FF AFAEGM+K+GDLQSGRPGE+R NCR+VN R +L
Sbjct: 42 TLYTNLVTREYVKMFSEDQDEFFRAFAEGMVKLGDLQSGRPGEIRFNCRVVNRRPIDVL 100
>ref|NP_179828.1| putative peroxidase; protein id: At2g22420.1, supported by cDNA:
113695. [Arabidopsis thaliana]
gi|25453217|sp|Q9SJZ2|PE17_ARATH Peroxidase 17 precursor
(Atperox P17) (ATP25a) gi|25285616|pir||D84612 probable
peroxidase [imported] - Arabidopsis thaliana
gi|4544449|gb|AAD22357.1| putative peroxidase
[Arabidopsis thaliana] gi|28393257|gb|AAO42057.1|
putative peroxidase [Arabidopsis thaliana]
gi|28827478|gb|AAO50583.1| putative peroxidase
[Arabidopsis thaliana]
Length = 329
Score = 73.6 bits (179), Expect = 2e-12
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = -3
Query: 535 TLFTFPKTRGLVRFYSTHQSQFFEAFAEGMLKMGDLQSGRPGEVRRNCRMVNARRAHLL 359
TL+T TR V+ +S Q +FF AFAEGM+K+GDLQSGRPGE+R NCR+VN R +L
Sbjct: 268 TLYTNLVTREYVKMFSEDQDEFFRAFAEGMVKLGDLQSGRPGEIRFNCRVVNRRPIDVL 326
>gb|AAL93152.1|AF485266_1 gaiacol peroxidase [Gossypium hirsutum]
Length = 329
Score = 71.2 bits (173), Expect = 8e-12
Identities = 34/59 (57%), Positives = 43/59 (72%)
Frame = -3
Query: 535 TLFTFPKTRGLVRFYSTHQSQFFEAFAEGMLKMGDLQSGRPGEVRRNCRMVNARRAHLL 359
TLFT +TR VR +S Q +FF+AF EGMLKMG+LQ +PGE+R NCR+VN R +L
Sbjct: 268 TLFTSRRTRPYVRVFSKDQDEFFKAFVEGMLKMGELQVEQPGEIRINCRVVNGRPVDVL 326
>ref|NP_193362.1| peroxidase family; protein id: At4g16270.1 [Arabidopsis thaliana]
gi|7433092|pir||D71429 hypothetical protein -
Arabidopsis thaliana gi|2244985|emb|CAB10406.1|
peroxidase like protein [Arabidopsis thaliana]
gi|7268376|emb|CAB78669.1| peroxidase like protein
[Arabidopsis thaliana]
Length = 355
Score = 55.5 bits (132), Expect = 4e-07
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = -3
Query: 520 PKTRGLVRFYSTHQSQFFEAFAEGMLKMGDLQSGRPGEVRRNCRMVN 380
P TR +V Y+T QS FFE F M+KMG + G E+R+NCRM+N
Sbjct: 309 PGTRAIVETYATDQSVFFEDFKNAMVKMGGIPGGSNSEIRKNCRMIN 355
>sp|O23474|PE40_ARATH Peroxidase 40 precursor (Atperox P40)
Length = 348
Score = 55.5 bits (132), Expect = 4e-07
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = -3
Query: 520 PKTRGLVRFYSTHQSQFFEAFAEGMLKMGDLQSGRPGEVRRNCRMVN 380
P TR +V Y+T QS FFE F M+KMG + G E+R+NCRM+N
Sbjct: 302 PGTRAIVETYATDQSVFFEDFKNAMVKMGGIPGGSNSEIRKNCRMIN 348
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,408,804
Number of Sequences: 1393205
Number of extensions: 9400772
Number of successful extensions: 19871
Number of sequences better than 10.0: 305
Number of HSP's better than 10.0 without gapping: 19322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19727
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
