Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003600A_C01 KMC003600A_c01
(430 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171777.1| ribosomal protein L19, putative; protein id: At... 101 2e-21
gb|AAL58923.1|AF462835_1 At1g02780/T14P4_3 [Arabidopsis thaliana] 99 9e-21
ref|NP_192132.1| putative ribosomal protein L19; protein id: At4... 97 6e-20
pir||T01426 ribosomal protein L19.T2H3.3 - Arabidopsis thaliana ... 92 2e-18
ref|NP_188300.1| putative ribosomal protein; protein id: At3g167... 91 3e-18
>ref|NP_171777.1| ribosomal protein L19, putative; protein id: At1g02780.1, supported
by cDNA: 2906., supported by cDNA: gi_15983411,
supported by cDNA: gi_18087584 [Arabidopsis thaliana]
gi|20143885|sp|Q9SRX2|R19A_ARATH 60S ribosomal protein
L19-1 gi|25295343|pir||G86157 probable ribosomal protein
L19 [imported] - Arabidopsis thaliana
gi|6056425|gb|AAF02889.1|AC009525_23 Putative ribosomal
protein L19 [Arabidopsis thaliana]
gi|15983412|gb|AAL11574.1|AF424580_1 At1g02780/T14P4_3
[Arabidopsis thaliana]
Length = 214
Score = 101 bits (252), Expect = 2e-21
Identities = 55/75 (73%), Positives = 60/75 (79%), Gaps = 2/75 (2%)
Frame = -1
Query: 430 ESIHKSKAEKAREKTLSDQFEAKRAQNQAARERKLARREERLAQGPGD--KPSATPSAEP 257
ESIHKSKAEKAREKTLSDQFEAKRA+N+A+RERK ARREERLA+GPG P A P+
Sbjct: 140 ESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDVAPVAAPAPAA 199
Query: 256 APAPKAAQAPKKSKK 212
PAP AA KKSKK
Sbjct: 200 TPAPTAAVPKKKSKK 214
>gb|AAL58923.1|AF462835_1 At1g02780/T14P4_3 [Arabidopsis thaliana]
Length = 214
Score = 99.4 bits (246), Expect = 9e-21
Identities = 54/75 (72%), Positives = 59/75 (78%), Gaps = 2/75 (2%)
Frame = -1
Query: 430 ESIHKSKAEKAREKTLSDQFEAKRAQNQAARERKLARREERLAQGPGD--KPSATPSAEP 257
ESIHKSKAEKAREKTLSDQFEAKRA+N+A+RERK ARREERLA+ PG P A P+
Sbjct: 140 ESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKSPGGDVAPVAAPAPAA 199
Query: 256 APAPKAAQAPKKSKK 212
PAP AA KKSKK
Sbjct: 200 TPAPTAAVPKKKSKK 214
>ref|NP_192132.1| putative ribosomal protein L19; protein id: At4g02230.1, supported
by cDNA: gi_14423511, supported by cDNA: gi_18377485
[Arabidopsis thaliana] gi|19924280|sp|P49693|R19C_ARATH
60S ribosomal protein L19-3 gi|25295341|pir||E85028
probable ribosomal protein L19 [imported] - Arabidopsis
thaliana gi|7268983|emb|CAB80716.1| putative ribosomal
protein L19 [Arabidopsis thaliana]
gi|14423512|gb|AAK62438.1|AF386993_1 Similar to 60S
ribosome protein L19 [Arabidopsis thaliana]
gi|18377486|gb|AAL66909.1| similar to 60S ribosome
protein L19 [Arabidopsis thaliana]
Length = 208
Score = 96.7 bits (239), Expect = 6e-20
Identities = 54/74 (72%), Positives = 60/74 (80%), Gaps = 1/74 (1%)
Frame = -1
Query: 430 ESIHKSKAEKAREKTLSDQFEAKRAQNQAARERKLARREERLAQGP-GDKPSATPSAEPA 254
ESIHKSKAEKAREKTLSDQFEAKRA+N+A+RERK ARREERLA+GP GD P+A P A+ A
Sbjct: 140 ESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDIPAAAPPAQTA 199
Query: 253 PAPKAAQAPKKSKK 212
P KKSKK
Sbjct: 200 EVP-----AKKSKK 208
>pir||T01426 ribosomal protein L19.T2H3.3 - Arabidopsis thaliana
gi|3377797|gb|AAC28170.1| Similar to 60S ribosome
protein L19; coded for by A. thaliana cDNA T04719; coded
for by A. thaliana cDNA H36046; coded for by A. thaliana
cDNA T44067; coded for by A. thaliana cDNA T14056; coded
for by A. thaliana cDNA R90691 [Arabidopsis thaliana]
Length = 200
Score = 91.7 bits (226), Expect = 2e-18
Identities = 48/60 (80%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
Frame = -1
Query: 430 ESIHKSKAEKAREKTLSDQFEAKRAQNQAARERKLARREERLAQGP-GDKPSATPSAEPA 254
ESIHKSKAEKAREKTLSDQFEAKRA+N+A+RERK ARREERLA+GP GD P+A P A+ A
Sbjct: 140 ESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDIPAAAPPAQTA 199
>ref|NP_188300.1| putative ribosomal protein; protein id: At3g16780.1, supported by
cDNA: 27978., supported by cDNA: gi_15010617, supported
by cDNA: gi_19699259 [Arabidopsis thaliana]
gi|17865565|sp|Q9LUQ6|R19B_ARATH 60S ribosomal protein
L19-2 gi|11994633|dbj|BAB02770.1| 60S ribosome protein
L19-like [Arabidopsis thaliana]
gi|15010618|gb|AAK73968.1| AT3g16780/MGL6_23
[Arabidopsis thaliana] gi|19699260|gb|AAL90996.1|
AT3g16780/MGL6_23 [Arabidopsis thaliana]
Length = 209
Score = 90.9 bits (224), Expect = 3e-18
Identities = 48/73 (65%), Positives = 55/73 (74%)
Frame = -1
Query: 430 ESIHKSKAEKAREKTLSDQFEAKRAQNQAARERKLARREERLAQGPGDKPSATPSAEPAP 251
ESIHK KAEKAREKTL+DQFEAKR +N+A+RERK ARREERLAQGPG + T PA
Sbjct: 140 ESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERLAQGPGGGETTT----PAG 195
Query: 250 APKAAQAPKKSKK 212
AP+ + KK K
Sbjct: 196 APQQPEVTKKKSK 208
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 353,527,273
Number of Sequences: 1393205
Number of extensions: 7289071
Number of successful extensions: 54106
Number of sequences better than 10.0: 725
Number of HSP's better than 10.0 without gapping: 40064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51866
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
