Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003599A_C03 KMC003599A_c03
(752 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O22518|RSP4_SOYBN 40S RIBOSOMAL PROTEIN SA (P40) gi|7441124|p... 186 4e-46
sp|O65751|RSP4_CICAR 40S RIBOSOMAL PROTEIN SA (P40) gi|3204099|e... 185 7e-46
gb|AAK92638.1|AC079633_18 Putative 40S Ribosomal protein [Oryza ... 125 6e-28
dbj|BAC21486.1| putative 40S ribosomal protein [Oryza sativa (ja... 122 5e-27
sp|O80377|RSP4_DAUCA 40S ribosomal protein SA (p40) gi|7441130|p... 118 8e-26
>sp|O22518|RSP4_SOYBN 40S RIBOSOMAL PROTEIN SA (P40) gi|7441124|pir||T05733
ribosome-associated protein p40 - soybean
gi|2444420|gb|AAB82659.1| ribosome-associated protein
p40 [Glycine max]
Length = 310
Score = 186 bits (471), Expect = 4e-46
Identities = 95/135 (70%), Positives = 104/135 (76%), Gaps = 8/135 (5%)
Frame = -3
Query: 750 IGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAQTQEEDEAPVPDYALPEYNA 571
IGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEA+ QEE+EAP DYA+ ++NA
Sbjct: 178 IGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAVDYAITDFNA 237
Query: 570 GAIAADGQWPAAIDQPWAESA-APIAAAPG--WAAAPEAVAGA-GDWGEAVAPPPPQQIP 403
GAIAADGQWP IDQ W+++ PI A PG W A EA A A GDWGEAV PPPQQIP
Sbjct: 238 GAIAADGQWPGTIDQSWSDAVPQPIPAVPGVNWGAPAEAPAAAGGDWGEAV--PPPQQIP 295
Query: 402 TPVD----VPATGWD 370
P V +GWD
Sbjct: 296 VPPSGIDTVQPSGWD 310
>sp|O65751|RSP4_CICAR 40S RIBOSOMAL PROTEIN SA (P40) gi|3204099|emb|CAA07226.1|
ribosome-associated protein p40 [Cicer arietinum]
Length = 300
Score = 185 bits (469), Expect = 7e-46
Identities = 96/132 (72%), Positives = 104/132 (78%), Gaps = 5/132 (3%)
Frame = -3
Query: 750 IGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAQTQEEDEAPVPDYALPEYNA 571
IGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEA+ EEDE PDYA+ ++N
Sbjct: 174 IGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQPEEDEVAAPDYAIADFNV 233
Query: 570 GAIAADGQWPAAIDQPWAESA-APIAAAP--GWAAAPEAVAGAGDWGEAVAPPPPQQIPT 400
AI +DGQWPAAIDQPW ++ PI A P W AAPEAV AGDWGEAV PPPQQIPT
Sbjct: 234 SAIPSDGQWPAAIDQPWNDAVPQPIPAVPAVNW-AAPEAV--AGDWGEAV--PPPQQIPT 288
Query: 399 P--VDVPATGWD 370
VPATGW+
Sbjct: 289 AGIESVPATGWE 300
>gb|AAK92638.1|AC079633_18 Putative 40S Ribosomal protein [Oryza sativa]
Length = 305
Score = 125 bits (314), Expect = 6e-28
Identities = 75/129 (58%), Positives = 84/129 (64%), Gaps = 2/129 (1%)
Frame = -3
Query: 750 IGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAQTQEEDEAPVPDY-ALPEYN 574
IGCLFWLLARMVLQMRGTI PG KWDVMVDLFFYR+PEEA+ QEE EAP D+ A+ +Y
Sbjct: 175 IGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEE-EAPAQDFAAITDY- 232
Query: 573 AGAIAADGQWPAAIDQPWAESAAPIAAAPG-WAAAPEAVAGAGDWGEAVAPPPPQQIPTP 397
A QW A DQ ++ AAP AA G W AAP VA A W +A AP + P
Sbjct: 233 ----TAPEQWSA--DQWTSDVAAPPAATVGDWGAAPAPVAAAEGWDQAGAPVATEAAVVP 286
Query: 396 VDVPATGWD 370
P TGWD
Sbjct: 287 PVAP-TGWD 294
>dbj|BAC21486.1| putative 40S ribosomal protein [Oryza sativa (japonica
cultivar-group)]
Length = 303
Score = 122 bits (306), Expect = 5e-27
Identities = 72/133 (54%), Positives = 80/133 (60%), Gaps = 7/133 (5%)
Frame = -3
Query: 750 IGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAQTQEEDEAPV--PDY-ALPE 580
IGCLFWLLARMVLQMRGTI PG KWDVMVDLFFYR+PEEA+ QEE+EA + PDY A+ E
Sbjct: 174 IGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAE 233
Query: 579 YNAGAIAA-DGQWPAAIDQPWAESAAPIAAAPGWAAAPEAVAGAGDWGEAVAPPPPQQ-- 409
Y A A G+W D +A P A W AAP A AG W A AP P +
Sbjct: 234 YAAPAADTWGGEW--GTDAAAQPAAIPAQAGADWTAAPPA---AGGWDTAAAPAPGWEQG 288
Query: 408 -IPTPVDVPATGW 373
P P P W
Sbjct: 289 SAPVPAAAPTPNW 301
>sp|O80377|RSP4_DAUCA 40S ribosomal protein SA (p40) gi|7441130|pir||T14281 P40-like
ribosomal protein - carrot gi|3551245|dbj|BAA32821.1|
P40-like protein [Daucus carota]
Length = 297
Score = 118 bits (296), Expect = 8e-26
Identities = 72/135 (53%), Positives = 82/135 (60%), Gaps = 8/135 (5%)
Frame = -3
Query: 750 IGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAQTQEEDEAPVPDYALPEYNA 571
IGCLFWLLARMVLQMRG I G KW+VMVDLFFYREPEE + QEE++ PV DY + +Y A
Sbjct: 171 IGCLFWLLARMVLQMRGVISQGHKWEVMVDLFFYREPEETKDQEEEDLPVGDY-VADYAA 229
Query: 570 GAIAADGQWPAAIDQPW-------AESAAPIAAAPGWAAAPEAVAGAGDWGEAVAPPPPQ 412
I QW A D W A SA P A W A +AG G W A APP P
Sbjct: 230 APIGGADQWNAIPDAQWGGDVVQPANSAVP---AGTWTDA-GPIAGDG-WDAAAAPPVPG 284
Query: 411 QIPTPVDVPA-TGWD 370
+ +DVPA TGW+
Sbjct: 285 AV--GLDVPAPTGWE 297
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 654,936,731
Number of Sequences: 1393205
Number of extensions: 15593432
Number of successful extensions: 102044
Number of sequences better than 10.0: 569
Number of HSP's better than 10.0 without gapping: 70488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94720
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36595604110
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
