Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003598A_C01 KMC003598A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_757957.1| transposase for IS1202-like insertion sequence ... 34 1.0
ref|NP_757958.1| transposase for IS1202-like insertion sequence ... 34 1.0
ref|NP_758167.1| transposase for IS1202-like insert sequence ele... 34 1.0
ref|NP_757618.1| transposase for IS1202-like insertion sequence ... 34 1.0
ref|NP_757620.1| transposase [Mycoplasma penetrans] gi|26453692|... 34 1.0
>ref|NP_757957.1| transposase for IS1202-like insertion sequence element [Mycoplasma
penetrans] gi|26454031|dbj|BAC44361.1| transposase for
IS1202-like insertion sequence element [Mycoplasma
penetrans]
Length = 562
Score = 33.9 bits (76), Expect = 1.0
Identities = 21/57 (36%), Positives = 30/57 (51%), Gaps = 2/57 (3%)
Frame = +3
Query: 6 NSCTPLQICISKY--QQKVQMQPGFTDSLYKPQSNAQIIHAKLHFHFPQNSKRKTEK 170
NS T L C++K Q K + QP F ++ + NAQ I+ KL N+K K +K
Sbjct: 338 NSVTNLTYCLNKLEIQVKSESQPTFKANVERSFKNAQQIYYKLFLKHGLNTKEKIQK 394
>ref|NP_757958.1| transposase for IS1202-like insertion sequence element [Mycoplasma
penetrans] gi|26454032|dbj|BAC44362.1| transposase for
IS1202-like insertion sequence element [Mycoplasma
penetrans]
Length = 471
Score = 33.9 bits (76), Expect = 1.0
Identities = 21/57 (36%), Positives = 30/57 (51%), Gaps = 2/57 (3%)
Frame = +3
Query: 6 NSCTPLQICISKY--QQKVQMQPGFTDSLYKPQSNAQIIHAKLHFHFPQNSKRKTEK 170
NS T L C++K Q K + QP F ++ + NAQ I+ KL N+K K +K
Sbjct: 247 NSVTNLTYCLNKLEIQVKSESQPTFKANVERSFKNAQQIYYKLFLKHGLNTKEKIQK 303
>ref|NP_758167.1| transposase for IS1202-like insert sequence element [Mycoplasma
penetrans] gi|26454242|dbj|BAC44571.1| transposase for
IS1202-like insert sequence element [Mycoplasma
penetrans]
Length = 518
Score = 33.9 bits (76), Expect = 1.0
Identities = 21/57 (36%), Positives = 30/57 (51%), Gaps = 2/57 (3%)
Frame = +3
Query: 6 NSCTPLQICISKY--QQKVQMQPGFTDSLYKPQSNAQIIHAKLHFHFPQNSKRKTEK 170
NS T L C++K Q K + QP F ++ + NAQ I+ KL N+K K +K
Sbjct: 294 NSVTNLTYCLNKLEIQVKSESQPTFKANVERSFKNAQQIYYKLFLKHGLNTKEKIQK 350
>ref|NP_757618.1| transposase for IS1202-like insertion sequence element [Mycoplasma
penetrans] gi|26453690|dbj|BAC44022.1| transposase for
IS1202-like insertion sequence element [Mycoplasma
penetrans]
Length = 518
Score = 33.9 bits (76), Expect = 1.0
Identities = 21/57 (36%), Positives = 30/57 (51%), Gaps = 2/57 (3%)
Frame = +3
Query: 6 NSCTPLQICISKY--QQKVQMQPGFTDSLYKPQSNAQIIHAKLHFHFPQNSKRKTEK 170
NS T L C++K Q K + QP F ++ + NAQ I+ KL N+K K +K
Sbjct: 294 NSVTNLTYCLNKLEIQVKSESQPTFKANVERSFKNAQQIYYKLFLKHGLNTKEKIQK 350
>ref|NP_757620.1| transposase [Mycoplasma penetrans] gi|26453692|dbj|BAC44024.1|
transposase [Mycoplasma penetrans]
Length = 518
Score = 33.9 bits (76), Expect = 1.0
Identities = 21/57 (36%), Positives = 30/57 (51%), Gaps = 2/57 (3%)
Frame = +3
Query: 6 NSCTPLQICISKY--QQKVQMQPGFTDSLYKPQSNAQIIHAKLHFHFPQNSKRKTEK 170
NS T L C++K Q K + QP F ++ + NAQ I+ KL N+K K +K
Sbjct: 294 NSVTNLTYCLNKLEIQVKSESQPTFKANVERSFKNAQQIYYKLFLKHGLNTKEKIQK 350
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 390,408,297
Number of Sequences: 1393205
Number of extensions: 8052930
Number of successful extensions: 20110
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20008
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
