Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003597A_C01 KMC003597A_c01
(454 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566396.1| VAMP protein SEC22; protein id: At3g11660.1, su... 45 4e-04
gb|AAO41900.1| putative VAMP protein SEC22 [Arabidopsis thaliana] 45 4e-04
ref|NP_190815.1| hairpin-induced protein, putative (HIN1); prote... 40 0.008
ref|NP_190008.1| hairpin-induced protein, putative (HIN1); prote... 38 0.041
ref|NP_181140.1| hairpin-induced protein, putative (HIN1); prote... 38 0.054
>ref|NP_566396.1| VAMP protein SEC22; protein id: At3g11660.1, supported by cDNA:
8166., supported by cDNA: gi_9502171 [Arabidopsis
thaliana] gi|6041819|gb|AAF02134.1|AC009918_6 unknown
protein [Arabidopsis thaliana]
gi|9502172|gb|AAF88021.1|AF264697_1 NDR1/HIN1-Like
protein 1 [Arabidopsis thaliana]
gi|21595601|gb|AAM66116.1| harpin-induced protein-like
[Arabidopsis thaliana]
Length = 209
Score = 44.7 bits (104), Expect = 4e-04
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -3
Query: 452 RCPAFITFGARSNGVAVGDSGAVKYQLVQRCSVSV 348
+CPA+I FG ++NGV VGD+ AVKY CSVSV
Sbjct: 176 KCPAYINFGNKANGVIVGDN-AVKYTFTTSCSVSV 209
>gb|AAO41900.1| putative VAMP protein SEC22 [Arabidopsis thaliana]
Length = 209
Score = 44.7 bits (104), Expect = 4e-04
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -3
Query: 452 RCPAFITFGARSNGVAVGDSGAVKYQLVQRCSVSV 348
+CPA+I FG ++NGV VGD+ AVKY CSVSV
Sbjct: 176 KCPAYINFGNKANGVIVGDN-AVKYTFTTSCSVSV 209
>ref|NP_190815.1| hairpin-induced protein, putative (HIN1); protein id: At3g52470.1,
supported by cDNA: 92178., supported by cDNA:
gi_19423891, supported by cDNA: gi_21281063 [Arabidopsis
thaliana] gi|7486002|pir||T08452 hypothetical protein
F22O6.150 - Arabidopsis thaliana
gi|4886280|emb|CAB43430.1| putative protein [Arabidopsis
thaliana] gi|19423892|gb|AAL87268.1| unknown protein
[Arabidopsis thaliana] gi|21281064|gb|AAM45089.1|
unknown protein [Arabidopsis thaliana]
gi|21617965|gb|AAM67015.1| putative harpin-induced
protein [Arabidopsis thaliana]
Length = 208
Score = 40.4 bits (93), Expect = 0.008
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -3
Query: 452 RCPAFITFGARSNGVAVGDSGAVKYQLVQRCSVSV 348
RC AFI G ++ GV VGD+ AVKY L +CSV+V
Sbjct: 175 RCQAFINLGNKAAGVLVGDN-AVKYTLANKCSVNV 208
>ref|NP_190008.1| hairpin-induced protein, putative (HIN1); protein id: At3g44220.1
[Arabidopsis thaliana] gi|11282595|pir||T49138
hypothetical protein T10D17.10 - Arabidopsis thaliana
gi|7649373|emb|CAB88990.1| putative protein [Arabidopsis
thaliana]
Length = 206
Score = 38.1 bits (87), Expect = 0.041
Identities = 19/34 (55%), Positives = 22/34 (63%)
Frame = -3
Query: 449 CPAFITFGARSNGVAVGDSGAVKYQLVQRCSVSV 348
CPA+IT +G D AVKYQLVQRC+V V
Sbjct: 177 CPAYITLAGHFSG----DGPAVKYQLVQRCAVDV 206
>ref|NP_181140.1| hairpin-induced protein, putative (HIN1); protein id: At2g35960.1,
supported by cDNA: 19481. [Arabidopsis thaliana]
gi|25354577|pir||B84775 probable harpin-induced protein
[imported] - Arabidopsis thaliana
gi|4510373|gb|AAD21461.1| putative harpin-induced
protein [Arabidopsis thaliana]
gi|21554028|gb|AAM63109.1| putative harpin-induced
protein [Arabidopsis thaliana]
Length = 210
Score = 37.7 bits (86), Expect = 0.054
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = -3
Query: 452 RCPAFITFGARSNGVAVGDSGAVKYQLVQRCSVSV 348
RC AFI ++ GV VG++ AVKY L+ +CSV+V
Sbjct: 177 RCQAFINLADKAAGVHVGEN-AVKYMLINKCSVNV 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 352,265,204
Number of Sequences: 1393205
Number of extensions: 6970911
Number of successful extensions: 23196
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 21870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23069
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
