Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003596A_C01 KMC003596A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_671881.1| hypothetical protein; protein id: At2g25737.1 [... 150 1e-35
pir||B84652 hypothetical protein At2g25740 [imported] - Arabidop... 147 6e-35
gb|AAL27555.1|AF420410_1 hypothetical protein [Musa acuminata] 123 1e-27
ref|NP_181201.2| unknown protein; protein id: At2g36630.1, suppo... 102 4e-21
ref|NP_172621.1| hypothetical protein; protein id: At1g11540.1 [... 54 1e-06
>ref|NP_671881.1| hypothetical protein; protein id: At2g25737.1 [Arabidopsis
thaliana] gi|22531098|gb|AAM97053.1| unknown protein
[Arabidopsis thaliana] gi|25083770|gb|AAN72117.1|
unknown protein [Arabidopsis thaliana]
gi|26450521|dbj|BAC42374.1| unknown protein [Arabidopsis
thaliana] gi|28951043|gb|AAO63445.1| At2g25737
[Arabidopsis thaliana]
Length = 476
Score = 150 bits (378), Expect = 1e-35
Identities = 76/92 (82%), Positives = 80/92 (86%)
Frame = -2
Query: 534 SSMSVIEYYLLKRFPIPYAGYLTLVATIAAVVGQHIVRRLIILFGRASLIIFILAGTIFI 355
SSMSV+EYYLLKRFP+PYA YL VATIAA VGQH+VRRLI GRASLIIFILA IFI
Sbjct: 384 SSMSVVEYYLLKRFPVPYALYLVGVATIAAWVGQHVVRRLIAAIGRASLIIFILASMIFI 443
Query: 354 SAISLGGVGIINMIHKIHNHEYMGFENLCKYG 259
SAISLGGVGI+NMI KI HEYMGFENLCKYG
Sbjct: 444 SAISLGGVGIVNMIGKIQRHEYMGFENLCKYG 475
>pir||B84652 hypothetical protein At2g25740 [imported] - Arabidopsis thaliana
gi|3643608|gb|AAC42255.1| hypothetical protein
[Arabidopsis thaliana] gi|20197510|gb|AAM15102.1|
hypothetical protein [Arabidopsis thaliana]
Length = 902
Score = 147 bits (372), Expect = 6e-35
Identities = 75/91 (82%), Positives = 79/91 (86%)
Frame = -2
Query: 534 SSMSVIEYYLLKRFPIPYAGYLTLVATIAAVVGQHIVRRLIILFGRASLIIFILAGTIFI 355
SSMSV+EYYLLKRFP+PYA YL VATIAA VGQH+VRRLI GRASLIIFILA IFI
Sbjct: 239 SSMSVVEYYLLKRFPVPYALYLVGVATIAAWVGQHVVRRLIAAIGRASLIIFILASMIFI 298
Query: 354 SAISLGGVGIINMIHKIHNHEYMGFENLCKY 262
SAISLGGVGI+NMI KI HEYMGFENLCKY
Sbjct: 299 SAISLGGVGIVNMIGKIQRHEYMGFENLCKY 329
>gb|AAL27555.1|AF420410_1 hypothetical protein [Musa acuminata]
Length = 238
Score = 123 bits (309), Expect = 1e-27
Identities = 63/84 (75%), Positives = 70/84 (83%)
Frame = -2
Query: 534 SSMSVIEYYLLKRFPIPYAGYLTLVATIAAVVGQHIVRRLIILFGRASLIIFILAGTIFI 355
SSMSV+EYYLLKRFPIPYA Y VA +AA VGQH+V+RLI + GRASLIIFILA TIFI
Sbjct: 114 SSMSVVEYYLLKRFPIPYALYFVSVALVAAFVGQHLVKRLIEILGRASLIIFILASTIFI 173
Query: 354 SAISLGGVGIINMIHKIHNHEYMG 283
SAISLGGVGI NM+ KI +HE G
Sbjct: 174 SAISLGGVGISNMVQKIQHHESWG 197
>ref|NP_181201.2| unknown protein; protein id: At2g36630.1, supported by cDNA:
gi_18700128 [Arabidopsis thaliana]
gi|18700129|gb|AAL77676.1| At2g36630/F1O11.26
[Arabidopsis thaliana] gi|22137236|gb|AAM91463.1|
At2g36630/F1O11.26 [Arabidopsis thaliana]
Length = 459
Score = 102 bits (253), Expect = 4e-21
Identities = 47/89 (52%), Positives = 65/89 (72%)
Frame = -2
Query: 534 SSMSVIEYYLLKRFPIPYAGYLTLVATIAAVVGQHIVRRLIILFGRASLIIFILAGTIFI 355
SS+SV+E+YLLKRFPIPYA YL V+ +A GQ +R+L+ + RAS+I+F+L+G I
Sbjct: 368 SSLSVVEFYLLKRFPIPYAMYLISVSILAGFWGQSFIRKLVAILRRASIIVFVLSGVICA 427
Query: 354 SAISLGGVGIINMIHKIHNHEYMGFENLC 268
SA+++G +GI I IHNHE+MGF C
Sbjct: 428 SALTMGVIGIEKSIKMIHNHEFMGFLGFC 456
>ref|NP_172621.1| hypothetical protein; protein id: At1g11540.1 [Arabidopsis
thaliana]
Length = 450
Score = 53.9 bits (128), Expect = 1e-06
Identities = 30/89 (33%), Positives = 50/89 (55%)
Frame = -2
Query: 534 SSMSVIEYYLLKRFPIPYAGYLTLVATIAAVVGQHIVRRLIILFGRASLIIFILAGTIFI 355
SSMS I+Y LL A LV +A++VG +V+++I +GRAS+I+F + + +
Sbjct: 362 SSMSAIQYLLLGMEHAGTAAIFALVCFVASLVGLMVVKKVIAKYGRASIIVFAVGIVMAL 421
Query: 354 SAISLGGVGIINMIHKIHNHEYMGFENLC 268
S + + G N+ + + YMGF+ C
Sbjct: 422 STVLMTTHGAFNVWNDFVSGRYMGFKLPC 450
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,229,761
Number of Sequences: 1393205
Number of extensions: 9787939
Number of successful extensions: 25475
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25472
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
