Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003594A_C01 KMC003594A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S63667 phragmoplastin 12 - soybean gi|1217994|gb|AAB05992.1... 189 2e-47
pir||S63668 phragmoplastin 5 - soybean gi|1218004|gb|AAC49183.1|... 188 5e-47
ref|NP_568602.2| dynamin-like protein (pir||S59558); protein id:... 177 7e-44
gb|AAM19784.1| AT5g42080/MJC20_19 [Arabidopsis thaliana] gi|2411... 177 7e-44
dbj|BAC01251.1| putative dynamin-like protein [Oryza sativa (jap... 165 4e-40
>pir||S63667 phragmoplastin 12 - soybean gi|1217994|gb|AAB05992.1| SDL
Length = 610
Score = 189 bits (480), Expect = 2e-47
Identities = 93/100 (93%), Positives = 99/100 (99%)
Frame = -1
Query: 584 DRYNDSYLRRIGTTVLSYVNMVCATLRHTIPKSIVYCQVREAKRTLLDYFFTELGKMDMK 405
DRYNDSYLRRIGTT+LSYVNMVCATLRH+IPKSIVYCQVREAKR+LLD+FFTELGKM++K
Sbjct: 511 DRYNDSYLRRIGTTILSYVNMVCATLRHSIPKSIVYCQVREAKRSLLDHFFTELGKMEIK 570
Query: 404 RLSSLLNEDPAIMERRSGLAKRLELYRSAQAEIDAVAWSK 285
RLSSLLNEDPAIMERRS LAKRLELYRSAQAEIDAVAWSK
Sbjct: 571 RLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 610
>pir||S63668 phragmoplastin 5 - soybean gi|1218004|gb|AAC49183.1| SDL5A
Length = 610
Score = 188 bits (477), Expect = 5e-47
Identities = 93/101 (92%), Positives = 99/101 (97%)
Frame = -1
Query: 587 FDRYNDSYLRRIGTTVLSYVNMVCATLRHTIPKSIVYCQVREAKRTLLDYFFTELGKMDM 408
FDRYNDSYLRRIGTT+LSYVNMVCATLR++IPKSIVYCQVREAKR+LLD+FFTELGKM+
Sbjct: 510 FDRYNDSYLRRIGTTILSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELGKMET 569
Query: 407 KRLSSLLNEDPAIMERRSGLAKRLELYRSAQAEIDAVAWSK 285
KRLSSLLNEDPAIMERRS LAKRLELYRSAQAEIDAVAWSK
Sbjct: 570 KRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 610
>ref|NP_568602.2| dynamin-like protein (pir||S59558); protein id: At5g42080.1,
supported by cDNA: gi_20453080, supported by cDNA:
gi_2267212, supported by cDNA: gi_807576 [Arabidopsis
thaliana] gi|27735181|sp|P42697|DYNL_ARATH Dynamin-like
protein gi|2129608|pir||S59558 dynamin-like protein -
Arabidopsis thaliana gi|807577|gb|AAA84446.1|
GTP-binding protein gi|9757953|dbj|BAB08441.1|
dynamin-like protein [Arabidopsis thaliana]
Length = 610
Score = 177 bits (450), Expect = 7e-44
Identities = 87/101 (86%), Positives = 96/101 (94%)
Frame = -1
Query: 587 FDRYNDSYLRRIGTTVLSYVNMVCATLRHTIPKSIVYCQVREAKRTLLDYFFTELGKMDM 408
FDRYNDSYLRRIG+ VLSYVNMVCA LR++IPKSIVYCQVREAKR+LLD+FF ELG MDM
Sbjct: 510 FDRYNDSYLRRIGSNVLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDHFFAELGTMDM 569
Query: 407 KRLSSLLNEDPAIMERRSGLAKRLELYRSAQAEIDAVAWSK 285
KRLSSLLNEDPAIMERRS ++KRLELYR+AQ+EIDAVAWSK
Sbjct: 570 KRLSSLLNEDPAIMERRSAISKRLELYRAAQSEIDAVAWSK 610
>gb|AAM19784.1| AT5g42080/MJC20_19 [Arabidopsis thaliana]
gi|24111387|gb|AAN46817.1| At5g42080/MJC20_19
[Arabidopsis thaliana]
Length = 610
Score = 177 bits (450), Expect = 7e-44
Identities = 87/101 (86%), Positives = 96/101 (94%)
Frame = -1
Query: 587 FDRYNDSYLRRIGTTVLSYVNMVCATLRHTIPKSIVYCQVREAKRTLLDYFFTELGKMDM 408
FDRYNDSYLRRIG+ VLSYVNMVCA LR++IPKSIVYCQVREAKR+LLD+FF ELG MDM
Sbjct: 510 FDRYNDSYLRRIGSNVLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDHFFAELGTMDM 569
Query: 407 KRLSSLLNEDPAIMERRSGLAKRLELYRSAQAEIDAVAWSK 285
KRLSSLLNEDPAIMERRS ++KRLELYR+AQ+EIDAVAWSK
Sbjct: 570 KRLSSLLNEDPAIMERRSAISKRLELYRAAQSEIDAVAWSK 610
>dbj|BAC01251.1| putative dynamin-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 644
Score = 165 bits (417), Expect = 4e-40
Identities = 79/101 (78%), Positives = 92/101 (90%)
Frame = -1
Query: 587 FDRYNDSYLRRIGTTVLSYVNMVCATLRHTIPKSIVYCQVREAKRTLLDYFFTELGKMDM 408
FDRYNDSYLRRI T VL+YVNMVC++LR++IPKSIVYCQVREAKRTLLD FFTELG ++
Sbjct: 544 FDRYNDSYLRRISTNVLAYVNMVCSSLRNSIPKSIVYCQVREAKRTLLDRFFTELGAREI 603
Query: 407 KRLSSLLNEDPAIMERRSGLAKRLELYRSAQAEIDAVAWSK 285
K +S LL+EDPA+MERR+ LAKRLELYRSAQAEIDAV W++
Sbjct: 604 KHISKLLDEDPAVMERRANLAKRLELYRSAQAEIDAVVWAR 644
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,918,964
Number of Sequences: 1393205
Number of extensions: 8305746
Number of successful extensions: 18301
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 17920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18299
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
