Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003593A_C01 KMC003593A_c01
(440 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_231558.1| similar to 60S ribosomal protein L35a [Rattus n... 37 0.042
gb|EAA22016.1| asparagine-rich protein [Plasmodium yoelii yoelii] 36 0.12
ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTE... 34 0.36
gb|AAN61517.1| 2MDa_1 protein [Caenorhabditis elegans] 33 0.61
ref|NP_504585.1| Fibronectin type III domain and M protein repea... 33 0.61
>ref|XP_231558.1| similar to 60S ribosomal protein L35a [Rattus norvegicus]
Length = 114
Score = 37.4 bits (85), Expect = 0.042
Identities = 26/101 (25%), Positives = 47/101 (45%)
Frame = +3
Query: 15 IFSFRKEKFIDKE*ASGKQTLLSKIKGSKQHNNKATAMNKTTALIKTRKKKLEHLNKREE 194
IF+ K F++ K T L KI+G+ N + KT+ + KKK+ L +
Sbjct: 17 IFAGYKRGFLNPR----KHTALLKIEGASVRNETEFYLGKTSTYVCKGKKKIPTLRGKPN 72
Query: 195 KNETTA*QVLTVLFPQVPRLHSQISSRQTNTLPSQETANNI 317
K+ V++ +V R H + ++ + LP++ T + I
Sbjct: 73 KSR--------VIWGKVSRAHGMVRAKFQSDLPAKATGHRI 105
>gb|EAA22016.1| asparagine-rich protein [Plasmodium yoelii yoelii]
Length = 828
Score = 35.8 bits (81), Expect = 0.12
Identities = 35/131 (26%), Positives = 59/131 (44%), Gaps = 6/131 (4%)
Frame = +3
Query: 6 PNTIFSFRKEKFIDKE*ASGKQTLLSKIKGSKQHNNKATAMNKTTALI------KTRKKK 167
P T RK +K+ + + + K KGS+ HNN A + K L K + K
Sbjct: 473 PTTQNKNRKLGKKEKKKHTDTRRISRKGKGSRTHNNSAKRVTKKNNLSVNSFDDKVKTDK 532
Query: 168 LEHLNKREEKNETTA*QVLTVLFPQVPRLHSQISSRQTNTLPSQETANNINEDNQRDL** 347
+H N +K+ Q +H++ +N LP ETAN++N+ N+ D+
Sbjct: 533 YQHKNLENKKH------------IQKNVMHNKKGKNMSNLLP-DETANDVNK-NKHDI-- 576
Query: 348 QAFCSITLDMP 380
SI++++P
Sbjct: 577 ----SISIEVP 583
>ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
gi|20984895|ref|XP_136007.1| similar to X INACTIVE
SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
Length = 172
Score = 34.3 bits (77), Expect = 0.36
Identities = 27/80 (33%), Positives = 36/80 (44%)
Frame = -2
Query: 283 FVCLELIWLWSRGT*GKSTVRTCYAVVSFFSSLLFKCSSFFFLVLISAVVLFIAVALLLC 104
FVCL L + S C+ +S L C +FFL L V F+A+ L+L
Sbjct: 42 FVCLFLPCIMSNSL--LYLFLPCFVSISSLQLCLILCYIYFFLAL--CVYFFLALCLIL- 96
Query: 103 CFEPFILLRRVCFPEAYSLS 44
C+ F L VC P S+S
Sbjct: 97 CYIYFFLALCVCLPCFVSIS 116
>gb|AAN61517.1| 2MDa_1 protein [Caenorhabditis elegans]
Length = 18534
Score = 33.5 bits (75), Expect = 0.61
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Frame = +3
Query: 27 RKEKFIDKE*ASGKQTLLSKIKGSKQHNNKATAMNKTTALIKTRKKKLEHLNKREEKNET 206
+KEK + A+ K+ K K K KA + N+T + ++ +++ K+ +K ET
Sbjct: 10115 QKEKQKLESEATSKKPTSEKQKDEKTPQEKAKSENETVMTTEPQQLEVKSEPKKSDKTET 10174
Query: 207 TA*QVLTVL------FPQVPRLHSQISSRQTNTLPSQETANNINEDNQR-DL**QAFCSI 365
+V + + P+ +I ++ +T QE + ++ D R DL I
Sbjct: 10175 VEKEVASSTEKSDDSKTKEPKEKKKIIKKKKDTTKPQEASKELSSDESRIDL----ESDI 10230
Query: 366 TLDMPNIPQLDTSSTRS 416
+L + + + D ST S
Sbjct: 10231 SLSLDTVTESDDLSTAS 10247
>ref|NP_504585.1| Fibronectin type III domain and M protein repeat [Caenorhabditis
elegans] gi|15145444|gb|AAF59460.2| Hypothetical protein
Y38B5A.1 [Caenorhabditis elegans]
Length = 2083
Score = 33.5 bits (75), Expect = 0.61
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Frame = +3
Query: 27 RKEKFIDKE*ASGKQTLLSKIKGSKQHNNKATAMNKTTALIKTRKKKLEHLNKREEKNET 206
+KEK + A+ K+ K K K KA + N+T + ++ +++ K+ +K ET
Sbjct: 1575 QKEKQKLESEATSKKPTSEKQKDEKTPQEKAKSENETVMTTEPQQLEVKSEPKKSDKTET 1634
Query: 207 TA*QVLTVL------FPQVPRLHSQISSRQTNTLPSQETANNINEDNQR-DL**QAFCSI 365
+V + + P+ +I ++ +T QE + ++ D R DL I
Sbjct: 1635 VEKEVASSTEKSDDSKTKEPKEKKKIIKKKKDTTKPQEASKELSSDESRIDL----ESDI 1690
Query: 366 TLDMPNIPQLDTSSTRS 416
+L + + + D ST S
Sbjct: 1691 SLSLDTVTESDDLSTAS 1707
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 337,856,564
Number of Sequences: 1393205
Number of extensions: 6516515
Number of successful extensions: 24510
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 22549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24301
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
