Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003591A_C01 KMC003591A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H84920 probable Tub family protein [imported] - Arabidopsis... 166 3e-40
ref|NP_182311.2| F-box containing tubby family protein; protein ... 166 3e-40
dbj|BAC20077.1| contains ESTs AU068695(C50045),AU166730(C50045)~... 155 3e-37
emb|CAB88665.1| tubby-like protein [Cicer arietinum] 152 4e-36
ref|NP_175160.1| F-box containing tubby family protein; protein ... 149 3e-35
>pir||H84920 probable Tub family protein [imported] - Arabidopsis thaliana
gi|3738302|gb|AAC63644.1| putative tubby protein
[Arabidopsis thaliana] gi|20197552|gb|AAM15124.1|
putative tubby protein [Arabidopsis thaliana]
Length = 407
Score = 166 bits (419), Expect = 3e-40
Identities = 76/88 (86%), Positives = 81/88 (91%)
Frame = -1
Query: 573 KNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPRNGVSEQAQENVVLQFGKVGKDVF 394
KNK+PRWHEQLQCWCLNFNGRVTVASVKNFQLVA+P NG + ENV+LQFGKVGKDVF
Sbjct: 320 KNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAPENGPAGPEHENVILQFGKVGKDVF 379
Query: 393 TMDYQYPISAFEAFAICLSSFDTKIACE 310
TMDYQYPISAF+AF ICLSSFDTKIACE
Sbjct: 380 TMDYQYPISAFQAFTICLSSFDTKIACE 407
>ref|NP_182311.2| F-box containing tubby family protein; protein id: At2g47900.1,
supported by cDNA: gi_18377639, supported by cDNA:
gi_20465542 [Arabidopsis thaliana]
gi|18377640|gb|AAL66970.1| putative tubby protein
[Arabidopsis thaliana] gi|20465543|gb|AAM20254.1|
putative tubby protein [Arabidopsis thaliana]
gi|27372514|gb|AAK98802.1| tubby-like protein 3
[Arabidopsis thaliana]
Length = 406
Score = 166 bits (419), Expect = 3e-40
Identities = 76/88 (86%), Positives = 81/88 (91%)
Frame = -1
Query: 573 KNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPRNGVSEQAQENVVLQFGKVGKDVF 394
KNK+PRWHEQLQCWCLNFNGRVTVASVKNFQLVA+P NG + ENV+LQFGKVGKDVF
Sbjct: 319 KNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAPENGPAGPEHENVILQFGKVGKDVF 378
Query: 393 TMDYQYPISAFEAFAICLSSFDTKIACE 310
TMDYQYPISAF+AF ICLSSFDTKIACE
Sbjct: 379 TMDYQYPISAFQAFTICLSSFDTKIACE 406
>dbj|BAC20077.1| contains ESTs AU068695(C50045),AU166730(C50045)~similar to tubby
protein [Oryza sativa (japonica cultivar-group)]
Length = 406
Score = 155 bits (393), Expect = 3e-37
Identities = 71/88 (80%), Positives = 80/88 (90%)
Frame = -1
Query: 573 KNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPRNGVSEQAQENVVLQFGKVGKDVF 394
KNKSPRWHE LQCWCLNF+GRVTVASVKNFQLVAS + + Q ++V+LQFGKVGKD+F
Sbjct: 319 KNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVASDESNPTNQEHDDVILQFGKVGKDMF 378
Query: 393 TMDYQYPISAFEAFAICLSSFDTKIACE 310
TMDY+YPISAF+AFAICLSSFDTKIACE
Sbjct: 379 TMDYRYPISAFQAFAICLSSFDTKIACE 406
>emb|CAB88665.1| tubby-like protein [Cicer arietinum]
Length = 411
Score = 152 bits (383), Expect = 4e-36
Identities = 70/90 (77%), Positives = 80/90 (88%), Gaps = 2/90 (2%)
Frame = -1
Query: 573 KNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS--PRNGVSEQAQENVVLQFGKVGKD 400
KNK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA+ P + VS + QE V+LQFGK+GKD
Sbjct: 322 KNKAPRWHEQLQCWCLNFVGRVTVASVKNFQLVAAVDPSHNVSSEEQERVILQFGKIGKD 381
Query: 399 VFTMDYQYPISAFEAFAICLSSFDTKIACE 310
+FTMDY YP+SAF+AFAICL+SFDTK ACE
Sbjct: 382 IFTMDYSYPLSAFQAFAICLTSFDTKPACE 411
>ref|NP_175160.1| F-box containing tubby family protein; protein id: At1g47270.1
[Arabidopsis thaliana] gi|25405194|pir||E96513 unknown
protein, 3155-1759 [imported] - Arabidopsis thaliana
gi|12325396|gb|AAG52638.1|AC079677_2 unknown protein;
3155-1759 [Arabidopsis thaliana]
Length = 388
Score = 149 bits (375), Expect = 3e-35
Identities = 69/93 (74%), Positives = 78/93 (83%), Gaps = 5/93 (5%)
Frame = -1
Query: 573 KNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPRNG-----VSEQAQENVVLQFGKV 409
KNKSPRWHEQLQCWCLNF GRVTVASVKNFQLVA+ + E+ Q+ V+LQFGK+
Sbjct: 296 KNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAAEAGKNMNIPEEEQDRVILQFGKI 355
Query: 408 GKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 310
GKD+FTMDY+YPISAF+AFAICLSSFDTK CE
Sbjct: 356 GKDIFTMDYRYPISAFQAFAICLSSFDTKPVCE 388
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,121,226
Number of Sequences: 1393205
Number of extensions: 11013437
Number of successful extensions: 28869
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 27818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28789
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
