Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003590A_C01 KMC003590A_c01
(409 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_705077.1| hypothetical protein [Plasmodium falciparum 3D7... 32 0.22
gb|ZP_00001110.1| hypothetical protein [Ferroplasma acidarmanus] 34 0.49
ref|NP_494126.1| Ubiquitin family member family member [Caenorha... 32 1.9
ref|NP_783149.1| phosphoglycerate mutase [Clostridium tetani E88... 31 3.2
gb|AAM61140.1| GDP-D-mannose-4,6-dehydratase MUR1 [Arabidopsis t... 31 4.2
>ref|NP_705077.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615322|emb|CAD52313.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 938
Score = 31.6 bits (70), Expect(2) = 0.22
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 43 ELL*RGISTHSHVKYNDIIYNRSVTLKL 126
E L I HSH Y D IYNR + KL
Sbjct: 409 EYLNNNIDAHSHYNYRDSIYNRKINKKL 436
Score = 22.3 bits (46), Expect(2) = 0.22
Identities = 8/30 (26%), Positives = 16/30 (52%)
Frame = +2
Query: 203 KICIVSYRKIFRFSRKGRVSNIWLSPKIIN 292
KI Y+ + R+GR + +W+ K ++
Sbjct: 450 KINPSEYKNVVLIKRRGRSNRMWVDRKYVD 479
>gb|ZP_00001110.1| hypothetical protein [Ferroplasma acidarmanus]
Length = 808
Score = 33.9 bits (76), Expect = 0.49
Identities = 21/73 (28%), Positives = 36/73 (48%)
Frame = -1
Query: 391 LDACALSPNQSSSPSLALDNALGNFLDANTDPTIDNFWGQPYVTDTSFAAESEYFSIGYD 212
L +L +S SP +++D A N+L ++ TI +PY T T F + ++ Y
Sbjct: 54 LGVLSLLHPESKSPDISVDTA-PNYLKTGSNYTISLKANEPYKTLTIFWGDGNSTALNYT 112
Query: 211 ADLWSQSDLYDEP 173
+ S S +Y+ P
Sbjct: 113 QETVSVSHIYNSP 125
>ref|NP_494126.1| Ubiquitin family member family member [Caenorhabditis elegans]
gi|7503926|pir||T32805 hypothetical protein F52C6.4 -
Caenorhabditis elegans gi|2746819|gb|AAB94982.1|
Hypothetical protein F52C6.4 [Caenorhabditis elegans]
Length = 292
Score = 32.0 bits (71), Expect = 1.9
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -2
Query: 192 VICTTNLFAYSSK*IKLLQEHK*FQSHASVVYNIVVLYMRVSADAPS*QL 43
++C N FAY S I +L+ F++ A + + I L+ R+S+ P Q+
Sbjct: 3 IVCNVNFFAYRSLEIFVLRFIDFFETLAHIYFAIFFLFNRISSKLPEDQI 52
>ref|NP_783149.1| phosphoglycerate mutase [Clostridium tetani E88]
gi|28204649|gb|AAO37086.1| phosphoglycerate mutase
[Clostridium tetani E88]
Length = 213
Score = 31.2 bits (69), Expect = 3.2
Identities = 11/17 (64%), Positives = 14/17 (81%)
Frame = -1
Query: 301 DPTIDNFWGQPYVTDTS 251
D TIDNFWG+P++ TS
Sbjct: 166 DLTIDNFWGEPHINPTS 182
>gb|AAM61140.1| GDP-D-mannose-4,6-dehydratase MUR1 [Arabidopsis thaliana]
Length = 373
Score = 30.8 bits (68), Expect = 4.2
Identities = 21/59 (35%), Positives = 29/59 (48%), Gaps = 1/59 (1%)
Frame = +3
Query: 225 EKYSDSAAKDVSVTYGCPQKLSIVGSVFASRKLPKALSRAKLGLD-D*FGDNAQASRIW 398
E Y A + + P++ G F +RK+ +AL R K+GL F N QASR W
Sbjct: 201 EAYGLFACNGILFNHESPRR----GENFVTRKITRALGRIKVGLQTKLFLGNLQASRDW 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 326,034,773
Number of Sequences: 1393205
Number of extensions: 6304250
Number of successful extensions: 17566
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17562
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
