Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003588A_C01 KMC003588A_c01
(398 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK96839.1| periaxin-like protein [Arabidopsis thaliana] 44 5e-04
ref|NP_196515.1| surface protein PspC-related; protein id: At5g0... 44 5e-04
ref|NP_196514.1| surface protein PspC-related; protein id: At5g0... 40 0.009
dbj|BAC15503.1| surface protein PspC-related-like protein [Oryza... 40 0.009
dbj|BAC15505.1| contains EST AU031253(E61219)~unknown protein [O... 39 0.012
>gb|AAK96839.1| periaxin-like protein [Arabidopsis thaliana]
Length = 370
Score = 43.9 bits (102), Expect = 5e-04
Identities = 20/31 (64%), Positives = 23/31 (73%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPKAIPTTSP 304
PE+PK+PE+PKPELPK VPE PK T P
Sbjct: 76 PELPKIPEIPKPELPK--VPEIPKPEETKLP 104
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/43 (48%), Positives = 27/43 (61%), Gaps = 6/43 (13%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKI------NVPEFPKAIPTTSP*VGIMP 286
PE+PK+PE+PKPELPK+ VPE PK T P + +P
Sbjct: 319 PELPKIPEVPKPELPKVPEITKPAVPEIPKPELPTMPQLPKLP 361
Score = 40.4 bits (93), Expect = 0.005
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPKA 322
PE+PKVPE+PKPELP VPE PK+
Sbjct: 286 PELPKVPEVPKPELP--TVPEVPKS 308
Score = 40.4 bits (93), Expect = 0.005
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK 325
PE PKVPE+PKPELPK+ PE PK
Sbjct: 186 PEAPKVPEIPKPELPKL--PEVPK 207
Score = 40.4 bits (93), Expect = 0.005
Identities = 18/27 (66%), Positives = 21/27 (77%), Gaps = 3/27 (11%)
Frame = -3
Query: 396 PEMPKVPELPKPELPK---INVPEFPK 325
PE+PK+PE+PKPELPK I PE PK
Sbjct: 120 PELPKMPEIPKPELPKVPEIQKPELPK 146
Score = 40.4 bits (93), Expect = 0.005
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -3
Query: 396 PEMPKVPELPKPELPK---INVPEFPKAIPTTSP*VGIMPYVVLSQ 268
PE+PK+PE+ KPELPK I PE PK P + +P V S+
Sbjct: 264 PELPKMPEIQKPELPKMPEIQKPELPKVPEVPKPELPTVPEVPKSE 309
Score = 40.0 bits (92), Expect = 0.007
Identities = 17/24 (70%), Positives = 20/24 (82%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK 325
PE+PK+PE+PKPELPK PE PK
Sbjct: 142 PELPKMPEIPKPELPKF--PEIPK 163
Score = 39.3 bits (90), Expect = 0.012
Identities = 16/30 (53%), Positives = 23/30 (76%), Gaps = 6/30 (20%)
Frame = -3
Query: 396 PEMPKVPELPKPE------LPKINVPEFPK 325
PE+PKVPE+PKPE +PK+ +P+FP+
Sbjct: 87 PELPKVPEIPKPEETKLPDIPKLELPKFPE 116
Score = 39.3 bits (90), Expect = 0.012
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = -3
Query: 393 EMPKVPELPKPELPKINVPEFPK 325
E+PK+PE PKPELPK+ PEFPK
Sbjct: 55 EVPKLPEFPKPELPKL--PEFPK 75
Score = 38.9 bits (89), Expect = 0.016
Identities = 21/39 (53%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -3
Query: 393 EMPKVPELPKPELPKINV---PEFPKAIPTTSP*VGIMP 286
E PK PE+PKPELPKI PE PK T P V +P
Sbjct: 309 EAPKFPEIPKPELPKIPEVPKPELPKVPEITKPAVPEIP 347
Score = 38.5 bits (88), Expect = 0.020
Identities = 17/24 (70%), Positives = 20/24 (82%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK 325
PE+PKVPE+ KPELPK +PE PK
Sbjct: 131 PELPKVPEIQKPELPK--MPEIPK 152
Score = 38.5 bits (88), Expect = 0.020
Identities = 20/41 (48%), Positives = 24/41 (57%), Gaps = 3/41 (7%)
Frame = -3
Query: 393 EMPKVPELPKPELPK---INVPEFPKAIPTTSP*VGIMPYV 280
E+PK PE+PKPELPK I PE PK P + MP +
Sbjct: 110 ELPKFPEIPKPELPKMPEIPKPELPKVPEIQKPELPKMPEI 150
Score = 38.1 bits (87), Expect = 0.027
Identities = 17/24 (70%), Positives = 21/24 (86%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK 325
PE+PK+PELPK E+PK+ PEFPK
Sbjct: 43 PEIPKLPELPKFEVPKL--PEFPK 64
Score = 37.7 bits (86), Expect = 0.035
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKI---NVPEFPKAIPTTSP 304
PE+PK PE+PKP+LPK + E PK + T P
Sbjct: 153 PELPKFPEIPKPDLPKFPENSKSEVPKLMETEKP 186
Score = 37.4 bits (85), Expect = 0.045
Identities = 16/24 (66%), Positives = 20/24 (82%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK 325
PE+PK+PE+ KPELPK+ PE PK
Sbjct: 225 PELPKMPEIQKPELPKL--PEVPK 246
Score = 36.6 bits (83), Expect = 0.077
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -3
Query: 393 EMPKVPELPKPELPKINVPEFPKAIPTTSP*VGIMPYV 280
E PKVPE+ KPELPK +PE PK P + MP +
Sbjct: 248 EAPKVPEIQKPELPK--MPELPKMPEIQKPELPKMPEI 283
Score = 35.8 bits (81), Expect = 0.13
Identities = 15/27 (55%), Positives = 21/27 (77%), Gaps = 3/27 (11%)
Frame = -3
Query: 396 PEMPKVPELPK---PELPKINVPEFPK 325
PE+PK+PE+PK P++P+I PE PK
Sbjct: 236 PELPKLPEVPKLEAPKVPEIQKPELPK 262
Score = 35.8 bits (81), Expect = 0.13
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -3
Query: 393 EMPKVPELPKPELPKINVPEFPKAIPTTSP*VGIMPYV 280
E PKVPE+ KPELPK +PE PK P + +P V
Sbjct: 209 EAPKVPEIQKPELPK--MPELPKMPEIQKPELPKLPEV 244
Score = 34.7 bits (78), Expect = 0.29
Identities = 15/24 (62%), Positives = 19/24 (78%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK 325
PE+PK+PELPK +P+I PE PK
Sbjct: 219 PELPKMPELPK--MPEIQKPELPK 240
Score = 34.3 bits (77), Expect = 0.38
Identities = 15/37 (40%), Positives = 23/37 (61%), Gaps = 6/37 (16%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKI------NVPEFPKAIPTTSP 304
PE+PK+PE+ KPELPK+ +P P+ + +P
Sbjct: 275 PELPKMPEIQKPELPKVPEVPKPELPTVPEVPKSEAP 311
>ref|NP_196515.1| surface protein PspC-related; protein id: At5g09530.1, supported by
cDNA: gi_15451135 [Arabidopsis thaliana]
gi|11358609|pir||T49945 periaxin-like protein -
Arabidopsis thaliana gi|7671436|emb|CAB89377.1|
periaxin-like protein [Arabidopsis thaliana]
Length = 370
Score = 43.9 bits (102), Expect = 5e-04
Identities = 20/31 (64%), Positives = 23/31 (73%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPKAIPTTSP 304
PE+PK+PE+PKPELPK VPE PK T P
Sbjct: 76 PELPKIPEIPKPELPK--VPEIPKPEETKLP 104
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/43 (48%), Positives = 27/43 (61%), Gaps = 6/43 (13%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKI------NVPEFPKAIPTTSP*VGIMP 286
PE+PK+PE+PKPELPK+ VPE PK T P + +P
Sbjct: 319 PELPKIPEVPKPELPKVPEITKPAVPEIPKPELPTMPQLPKLP 361
Score = 40.8 bits (94), Expect = 0.004
Identities = 18/34 (52%), Positives = 23/34 (66%), Gaps = 3/34 (8%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKI---NVPEFPKAIPTTSP 304
PE+PK PE+PKP+LPK + PE PK + T P
Sbjct: 153 PELPKFPEIPKPDLPKFPENSKPEVPKLMETEKP 186
Score = 40.4 bits (93), Expect = 0.005
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPKA 322
PE+PKVPE+PKPELP VPE PK+
Sbjct: 286 PELPKVPEVPKPELP--TVPEVPKS 308
Score = 40.4 bits (93), Expect = 0.005
Identities = 18/27 (66%), Positives = 21/27 (77%), Gaps = 3/27 (11%)
Frame = -3
Query: 396 PEMPKVPELPKPELPK---INVPEFPK 325
PE+PK+PE+PKPELPK I PE PK
Sbjct: 120 PELPKMPEIPKPELPKVPEIQKPELPK 146
Score = 40.4 bits (93), Expect = 0.005
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -3
Query: 396 PEMPKVPELPKPELPK---INVPEFPKAIPTTSP*VGIMPYVVLSQ 268
PE+PK+PE+ KPELPK I PE PK P + +P V S+
Sbjct: 264 PELPKMPEIQKPELPKMPEIQKPELPKVPEVPKPELPTVPEVPKSE 309
Score = 40.4 bits (93), Expect = 0.005
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK 325
PE PKVPE+PKPELPK+ PE PK
Sbjct: 186 PEAPKVPEIPKPELPKL--PEVPK 207
Score = 40.0 bits (92), Expect = 0.007
Identities = 17/24 (70%), Positives = 20/24 (82%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK 325
PE+PK+PE+PKPELPK PE PK
Sbjct: 142 PELPKMPEIPKPELPKF--PEIPK 163
Score = 39.3 bits (90), Expect = 0.012
Identities = 16/30 (53%), Positives = 23/30 (76%), Gaps = 6/30 (20%)
Frame = -3
Query: 396 PEMPKVPELPKPE------LPKINVPEFPK 325
PE+PKVPE+PKPE +PK+ +P+FP+
Sbjct: 87 PELPKVPEIPKPEETKLPDIPKLELPKFPE 116
Score = 39.3 bits (90), Expect = 0.012
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = -3
Query: 393 EMPKVPELPKPELPKINVPEFPK 325
E+PK+PE PKPELPK+ PEFPK
Sbjct: 55 EVPKLPEFPKPELPKL--PEFPK 75
Score = 38.9 bits (89), Expect = 0.016
Identities = 21/39 (53%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -3
Query: 393 EMPKVPELPKPELPKINV---PEFPKAIPTTSP*VGIMP 286
E PK PE+PKPELPKI PE PK T P V +P
Sbjct: 309 EAPKFPEIPKPELPKIPEVPKPELPKVPEITKPAVPEIP 347
Score = 38.5 bits (88), Expect = 0.020
Identities = 20/41 (48%), Positives = 24/41 (57%), Gaps = 3/41 (7%)
Frame = -3
Query: 393 EMPKVPELPKPELPK---INVPEFPKAIPTTSP*VGIMPYV 280
E+PK PE+PKPELPK I PE PK P + MP +
Sbjct: 110 ELPKFPEIPKPELPKMPEIPKPELPKVPEIQKPELPKMPEI 150
Score = 38.5 bits (88), Expect = 0.020
Identities = 17/24 (70%), Positives = 20/24 (82%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK 325
PE+PKVPE+ KPELPK +PE PK
Sbjct: 131 PELPKVPEIQKPELPK--MPEIPK 152
Score = 38.1 bits (87), Expect = 0.027
Identities = 17/24 (70%), Positives = 21/24 (86%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK 325
PE+PK+PELPK E+PK+ PEFPK
Sbjct: 43 PEIPKLPELPKFEVPKL--PEFPK 64
Score = 37.4 bits (85), Expect = 0.045
Identities = 16/24 (66%), Positives = 20/24 (82%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK 325
PE+PK+PE+ KPELPK+ PE PK
Sbjct: 225 PELPKMPEIQKPELPKL--PEVPK 246
Score = 36.6 bits (83), Expect = 0.077
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -3
Query: 393 EMPKVPELPKPELPKINVPEFPKAIPTTSP*VGIMPYV 280
E PKVPE+ KPELPK +PE PK P + MP +
Sbjct: 248 EAPKVPEIQKPELPK--MPELPKMPEIQKPELPKMPEI 283
Score = 35.8 bits (81), Expect = 0.13
Identities = 15/27 (55%), Positives = 21/27 (77%), Gaps = 3/27 (11%)
Frame = -3
Query: 396 PEMPKVPELPK---PELPKINVPEFPK 325
PE+PK+PE+PK P++P+I PE PK
Sbjct: 236 PELPKLPEVPKLEAPKVPEIQKPELPK 262
Score = 35.8 bits (81), Expect = 0.13
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = -3
Query: 393 EMPKVPELPKPELPKINVPEFPKAIPTTSP*VGIMPYV 280
E PKVPE+ KPELPK +PE PK P + +P V
Sbjct: 209 EAPKVPEIQKPELPK--MPELPKMPEIQKPELPKLPEV 244
Score = 34.7 bits (78), Expect = 0.29
Identities = 15/24 (62%), Positives = 19/24 (78%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK 325
PE+PK+PELPK +P+I PE PK
Sbjct: 219 PELPKMPELPK--MPEIQKPELPK 240
Score = 34.3 bits (77), Expect = 0.38
Identities = 15/37 (40%), Positives = 23/37 (61%), Gaps = 6/37 (16%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKI------NVPEFPKAIPTTSP 304
PE+PK+PE+ KPELPK+ +P P+ + +P
Sbjct: 275 PELPKMPEIQKPELPKVPEVPKPELPTVPEVPKSEAP 311
Score = 32.3 bits (72), Expect = 1.5
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKI---NVPEFPKAIPTTSP*VGIMPYV 280
P++PK PE KPE+PK+ PE PK P + +P V
Sbjct: 164 PDLPKFPENSKPEVPKLMETEKPEAPKVPEIPKPELPKLPEV 205
>ref|NP_196514.1| surface protein PspC-related; protein id: At5g09520.1 [Arabidopsis
thaliana] gi|11358661|pir||T49946 probable proline-rich
protein - Arabidopsis thaliana
gi|7671437|emb|CAB89378.1| putative proline-rich protein
[Arabidopsis thaliana]
Length = 130
Score = 39.7 bits (91), Expect = 0.009
Identities = 17/24 (70%), Positives = 20/24 (82%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK 325
PE+P PELPKPE+PK+ PEFPK
Sbjct: 41 PEIPTFPELPKPEMPKL--PEFPK 62
Score = 37.4 bits (85), Expect = 0.045
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -3
Query: 396 PEMPKVPELPK---PELPKINVPEFPKAIPTTSP*VGIMP 286
PEMPK+PE PK P+LP+I PE PK P + P
Sbjct: 52 PEMPKLPEFPKLELPKLPEIPKPEMPKLPEIQKPELPTFP 91
Score = 36.6 bits (83), Expect = 0.077
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = -3
Query: 393 EMPKVPELPKPELPKINVPEFPKAIPTTSP*VGIMP 286
E+PK+PE+PKPE+PK+ PE K T P + MP
Sbjct: 64 ELPKLPEIPKPEMPKL--PEIQKPELPTFPELPKMP 97
Score = 34.7 bits (78), Expect = 0.29
Identities = 16/31 (51%), Positives = 20/31 (63%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPKAIPTTSP 304
PE+PK+PE PK + PK+ PE PK T P
Sbjct: 91 PELPKMPEFPKFDFPKL--PELPKPEETKVP 119
Score = 33.5 bits (75), Expect = 0.66
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -3
Query: 396 PEMPKVPELPK-PELPKINVPEFPK 325
PE+P PELPK PE PK + P+ P+
Sbjct: 85 PELPTFPELPKMPEFPKFDFPKLPE 109
Score = 31.6 bits (70), Expect = 2.5
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = -3
Query: 393 EMPKVPELPKPE---LPKINVPEFP 328
+ PK+PELPKPE +P +P+FP
Sbjct: 103 DFPKLPELPKPEETKVPAFTMPKFP 127
>dbj|BAC15503.1| surface protein PspC-related-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 133
Score = 39.7 bits (91), Expect = 0.009
Identities = 18/28 (64%), Positives = 21/28 (74%), Gaps = 3/28 (10%)
Frame = -3
Query: 396 PEMPKVPELPK---PELPKINVPEFPKA 322
PE+PK+PE+P PELPK VPE PKA
Sbjct: 81 PELPKIPEVPHLAVPELPKPEVPEIPKA 108
Score = 38.5 bits (88), Expect = 0.020
Identities = 15/24 (62%), Positives = 19/24 (78%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK 325
PE+PKVPELP P +P++ PE PK
Sbjct: 62 PELPKVPELPHPVVPELPKPELPK 85
Score = 35.4 bits (80), Expect = 0.17
Identities = 20/32 (62%), Positives = 21/32 (65%), Gaps = 8/32 (25%)
Frame = -3
Query: 396 PEMPK--VPELPKPELPKI------NVPEFPK 325
PE+P VPELPKPELPKI VPE PK
Sbjct: 68 PELPHPVVPELPKPELPKIPEVPHLAVPELPK 99
Score = 35.0 bits (79), Expect = 0.23
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKI-NVPEFPKAIPTTSP 304
P P VPE+PKPELP++ VPE P + P
Sbjct: 48 PAHPAVPEIPKPELPELPKVPELPHPVVPELP 79
>dbj|BAC15505.1| contains EST AU031253(E61219)~unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 130
Score = 39.3 bits (90), Expect = 0.012
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Frame = -3
Query: 396 PEMPKVPELPKPELPKINVPEFPK--AIP 316
PE PKVPELP PE+P++ PE P+ A+P
Sbjct: 70 PEFPKVPELPHPEVPELPKPELPEHPAVP 98
Score = 37.0 bits (84), Expect = 0.059
Identities = 17/27 (62%), Positives = 19/27 (69%), Gaps = 3/27 (11%)
Frame = -3
Query: 396 PEMPKVPELPKPE---LPKINVPEFPK 325
PE P VPELPKPE LPK+ +P PK
Sbjct: 92 PEHPAVPELPKPELPSLPKVELPPLPK 118
Score = 37.0 bits (84), Expect = 0.059
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Frame = -3
Query: 396 PEMPK--------VPELPKPELPK-INVPEFPKAIPTTSP*VGIMP 286
PE+PK VPELPKPELP VPEFPK P V +P
Sbjct: 42 PELPKPELPPHLAVPELPKPELPHGAAVPEFPKVPELPHPEVPELP 87
Score = 31.6 bits (70), Expect = 2.5
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -3
Query: 396 PEMPK--VPELPKPELPKINVPEFPKAIPTTSP 304
PE+PK +P LPK ELP + PEF P P
Sbjct: 98 PELPKPELPSLPKVELPPLPKPEFHFPEPEAKP 130
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 303,975,479
Number of Sequences: 1393205
Number of extensions: 5700804
Number of successful extensions: 17633
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 15696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17281
length of database: 448,689,247
effective HSP length: 108
effective length of database: 298,223,107
effective search space used: 7157354568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
