Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003587A_C01 KMC003587A_c01
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187110.1| putative tryptophanyl-tRNA synthetase; protein ... 201 5e-51
dbj|BAA25288.1| tryptophan-tRNA synthetase [Cavia porcellus] 134 1e-30
ref|XP_234566.1| similar to Tryptophanyl-tRNA synthetase (Trypto... 133 2e-30
emb|CAA44450.1| IFP53 [Homo sapiens] 132 5e-30
emb|CAA49347.1| tryptophan--tRNA ligase [Mus musculus] 132 5e-30
>ref|NP_187110.1| putative tryptophanyl-tRNA synthetase; protein id: At3g04600.1,
supported by cDNA: gi_19310592 [Arabidopsis thaliana]
gi|6175164|gb|AAF04890.1|AC011437_5 putative
tryptophanyl-tRNA synthetase [Arabidopsis thaliana]
gi|19310593|gb|AAL85027.1| putative tryptophanyl-tRNA
synthetase [Arabidopsis thaliana]
gi|21436361|gb|AAM51350.1| putative tryptophanyl-tRNA
synthetase [Arabidopsis thaliana]
Length = 402
Score = 201 bits (512), Expect = 5e-51
Identities = 98/112 (87%), Positives = 106/112 (94%)
Frame = -1
Query: 624 YVTDSAKDIKNKVNKYAFSGGQDSIEKHRQLGANLEVDIPIKYLSFFLEDDDELEHIKKE 445
YVTDSAKDIKNK+N+YAFSGGQDSIEKHR+LGANLEVDIP+KYLSFFLEDD ELEHIKKE
Sbjct: 291 YVTDSAKDIKNKINRYAFSGGQDSIEKHRELGANLEVDIPVKYLSFFLEDDSELEHIKKE 350
Query: 444 YGAGRMLTGEVKQRLVEVLTALVERHCRARAAVTEEMVDAFMAVRPLPHMFD 289
YG GRMLTGEVK+RL EVLT +VERH RARAAVT+EMVDAFMAVRPLP MF+
Sbjct: 351 YGEGRMLTGEVKKRLTEVLTEIVERHRRARAAVTDEMVDAFMAVRPLPSMFE 402
>dbj|BAA25288.1| tryptophan-tRNA synthetase [Cavia porcellus]
Length = 305
Score = 134 bits (336), Expect = 1e-30
Identities = 63/111 (56%), Positives = 82/111 (73%)
Frame = -1
Query: 624 YVTDSAKDIKNKVNKYAFSGGQDSIEKHRQLGANLEVDIPIKYLSFFLEDDDELEHIKKE 445
++TDSAK IK KVNK+AFSGG+D++E+HRQ G N +VD+ YL+FFLEDDD LE I+K+
Sbjct: 194 FLTDSAKQIKTKVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDRLEQIRKD 253
Query: 444 YGAGRMLTGEVKQRLVEVLTALVERHCRARAAVTEEMVDAFMAVRPLPHMF 292
Y +G MLTGE+K+ L++VL L+ H R VT+EMV FM RPL F
Sbjct: 254 YTSGAMLTGELKKTLIDVLQPLIAEHQARRKEVTDEMVKEFMTPRPLSFHF 304
>ref|XP_234566.1| similar to Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase)
(TRPRS) (IFP53) (hWRS) [Rattus norvegicus]
Length = 444
Score = 133 bits (335), Expect = 2e-30
Identities = 64/111 (57%), Positives = 83/111 (74%)
Frame = -1
Query: 624 YVTDSAKDIKNKVNKYAFSGGQDSIEKHRQLGANLEVDIPIKYLSFFLEDDDELEHIKKE 445
++TD+AK IK+KVNK+AFSGG+D++E+HRQ G N EVD+ YL+FFLEDDD LE I+K+
Sbjct: 333 FLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIRKD 392
Query: 444 YGAGRMLTGEVKQRLVEVLTALVERHCRARAAVTEEMVDAFMAVRPLPHMF 292
Y +G MLTGE+K+ L++VL L+ H R AVTEE V FMA R L F
Sbjct: 393 YTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMAPRQLSFHF 443
>emb|CAA44450.1| IFP53 [Homo sapiens]
Length = 471
Score = 132 bits (331), Expect = 5e-30
Identities = 63/111 (56%), Positives = 83/111 (74%)
Frame = -1
Query: 624 YVTDSAKDIKNKVNKYAFSGGQDSIEKHRQLGANLEVDIPIKYLSFFLEDDDELEHIKKE 445
++TD+AK IK KVNK+AFSGG+D+IE+HRQ G N +VD+ YL+FFLEDDD+LE I+K+
Sbjct: 360 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKD 419
Query: 444 YGAGRMLTGEVKQRLVEVLTALVERHCRARAAVTEEMVDAFMAVRPLPHMF 292
Y +GRMLTGE+K+ L+EVL L+ H R VT+E+V FM R L F
Sbjct: 420 YTSGRMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 470
>emb|CAA49347.1| tryptophan--tRNA ligase [Mus musculus]
Length = 475
Score = 132 bits (331), Expect = 5e-30
Identities = 63/111 (56%), Positives = 82/111 (73%)
Frame = -1
Query: 624 YVTDSAKDIKNKVNKYAFSGGQDSIEKHRQLGANLEVDIPIKYLSFFLEDDDELEHIKKE 445
++TD+AK IK+KVNK+AFSGG+D++E+HRQ G N EVD+ YL+FFLEDDD LE I+K+
Sbjct: 364 FLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQIRKD 423
Query: 444 YGAGRMLTGEVKQRLVEVLTALVERHCRARAAVTEEMVDAFMAVRPLPHMF 292
Y +G MLTGE+K+ L++VL L+ H R AVTEE V FM R L F
Sbjct: 424 YTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEETVKEFMTPRQLSFHF 474
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,890,018
Number of Sequences: 1393205
Number of extensions: 10662343
Number of successful extensions: 29928
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 27965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29479
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
