Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003585A_C01 KMC003585A_c01
(438 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200455.1| F-box protein; protein id: At5g56440.1 [Arabido... 35 1e-04
pir||F86448 F5D14.14 protein - Arabidopsis thaliana gi|8920612|g... 35 8e-04
ref|NP_564398.1| F-box protein; protein id: At1g32375.1 [Arabido... 35 8e-04
ref|NP_200491.1| putative protein; protein id: At5g56800.1 [Arab... 42 0.001
ref|NP_190923.1| putative protein; protein id: At3g53550.1 [Arab... 41 0.003
>ref|NP_200455.1| F-box protein; protein id: At5g56440.1 [Arabidopsis thaliana]
gi|10177843|dbj|BAB11272.1|
emb|CAB62440.1~gene_id:MCD7.20~similar to unknown
protein [Arabidopsis thaliana]
Length = 430
Score = 35.0 bits (79), Expect(2) = 1e-04
Identities = 13/41 (31%), Positives = 24/41 (57%)
Frame = -2
Query: 383 SDWQDPPSVPKCILLHLKVCYLNDYRGTKGELQFARYIMRH 261
+ W+ P SVPKC++ L+ DY+G + E + Y++ +
Sbjct: 348 TQWEQPSSVPKCLISSLETVEWIDYKGREVEKKVVMYLLEN 388
Score = 30.0 bits (66), Expect(2) = 1e-04
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 276 IYYAALERFLKRMTISSTPAENQRGKLKNVKKLFSCTRRSATCKFSFT 133
+Y R LK M I S + N KLK +++L S R C SFT
Sbjct: 383 MYLLENSRQLKTMAIRSLKSTNDNEKLKMLQELSSIHRICTKCGLSFT 430
>pir||F86448 F5D14.14 protein - Arabidopsis thaliana
gi|8920612|gb|AAF81334.1|AC007767_14 Contains similarity
to a hypothetical protein T25K17.150 gi|7487424 from
Arabidopsis thaliana BAC T25K17 gb|AL049171
Length = 536
Score = 35.0 bits (79), Expect(2) = 8e-04
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = -2
Query: 377 WQDPPSVPKCILLHLKVCYLNDYRGTKGELQFARYIMR 264
W +P +VP+C+L L+ Y GT+ E + A +I+R
Sbjct: 457 WNEPSAVPECLLTSLETLEWVKYEGTEEEKEVAAFILR 494
Score = 27.3 bits (59), Expect(2) = 8e-04
Identities = 15/38 (39%), Positives = 24/38 (62%)
Frame = -1
Query: 249 LKRMTISSTPAENQRGKLKNVKKLFSCTRRSATCKFSF 136
LK++TISS + + K + +K+L RRS TC+ +F
Sbjct: 499 LKKVTISSKSTDINK-KFEMLKELSLLFRRSPTCQIAF 535
>ref|NP_564398.1| F-box protein; protein id: At1g32375.1 [Arabidopsis thaliana]
Length = 422
Score = 35.0 bits (79), Expect(2) = 8e-04
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = -2
Query: 377 WQDPPSVPKCILLHLKVCYLNDYRGTKGELQFARYIMR 264
W +P +VP+C+L L+ Y GT+ E + A +I+R
Sbjct: 343 WNEPSAVPECLLTSLETLEWVKYEGTEEEKEVAAFILR 380
Score = 27.3 bits (59), Expect(2) = 8e-04
Identities = 15/38 (39%), Positives = 24/38 (62%)
Frame = -1
Query: 249 LKRMTISSTPAENQRGKLKNVKKLFSCTRRSATCKFSF 136
LK++TISS + + K + +K+L RRS TC+ +F
Sbjct: 385 LKKVTISSKSTDINK-KFEMLKELSLLFRRSPTCQIAF 421
>ref|NP_200491.1| putative protein; protein id: At5g56800.1 [Arabidopsis thaliana]
gi|10176784|dbj|BAB09898.1|
emb|CAB62440.1~gene_id:MIK19.27~similar to unknown
protein [Arabidopsis thaliana]
Length = 344
Score = 42.4 bits (98), Expect = 0.001
Identities = 17/37 (45%), Positives = 25/37 (66%)
Frame = -2
Query: 377 WQDPPSVPKCILLHLKVCYLNDYRGTKGELQFARYIM 267
W +P SVPKC+ HL++ Y+GTK E + A+YI+
Sbjct: 268 WNEPCSVPKCLSSHLEIFEWRHYKGTKQERKVAKYIL 304
>ref|NP_190923.1| putative protein; protein id: At3g53550.1 [Arabidopsis thaliana]
gi|11357794|pir||T45895 hypothetical protein F4P12.250 -
Arabidopsis thaliana gi|6729506|emb|CAB67662.1| putative
protein [Arabidopsis thaliana]
Length = 256
Score = 41.2 bits (95), Expect = 0.003
Identities = 17/37 (45%), Positives = 22/37 (58%)
Frame = -2
Query: 377 WQDPPSVPKCILLHLKVCYLNDYRGTKGELQFARYIM 267
W P SVP+C+ HLK+ YRG K E + RYI+
Sbjct: 165 WNQPSSVPECLSNHLKIFEWKGYRGRKEEKEIVRYIL 201
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 353,471,864
Number of Sequences: 1393205
Number of extensions: 6938862
Number of successful extensions: 13038
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 12837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13037
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
