Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003583A_C02 KMC003583A_c02
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB71131.1| hypothetical protein [Cicer arietinum] 208 4e-53
emb|CAC12882.1| O-linked GlcNAc transferase like [Nicotiana taba... 194 1e-48
ref|NP_683529.1| auxin-regulated protein; protein id: At3g04830.... 174 6e-43
ref|NP_566239.2| auxin-regulated protein; protein id: At3g04830.... 174 6e-43
gb|AAD49104.1|AF177535_8 contains similarity to O-linked GlcNAc ... 174 1e-42
>emb|CAB71131.1| hypothetical protein [Cicer arietinum]
Length = 112
Score = 208 bits (530), Expect = 4e-53
Identities = 103/112 (91%), Positives = 111/112 (98%)
Frame = -2
Query: 587 ELMLAQPTVPLYHLAYADVLYTIGGLENLQTAKKYYASTIDLTGGKNTRALFGICLCTSA 408
E++LAQPTVPLYHLAYADVLYT+GGLENLQTAKKYYASTIDLTGGKNTRALFG+CLCTSA
Sbjct: 1 EVILAQPTVPLYHLAYADVLYTLGGLENLQTAKKYYASTIDLTGGKNTRALFGVCLCTSA 60
Query: 407 IAQLSKGKSKEEKEGSQLQSLAAKALEKDYKQRAPDKLPQLTSALKSLTLSS 252
IAQL+KGK+KE+KEGSQL SLAAKALEKDYKQRAPDKLPQLT+ALKSLTLSS
Sbjct: 61 IAQLTKGKNKEDKEGSQLHSLAAKALEKDYKQRAPDKLPQLTTALKSLTLSS 112
>emb|CAC12882.1| O-linked GlcNAc transferase like [Nicotiana tabacum]
Length = 213
Score = 194 bits (492), Expect = 1e-48
Identities = 95/116 (81%), Positives = 107/116 (91%)
Frame = -2
Query: 605 AAFCYEELMLAQPTVPLYHLAYADVLYTIGGLENLQTAKKYYASTIDLTGGKNTRALFGI 426
+AFCYEEL+L+QPTVPLYHLAYADVLYT+GGLENLQ AKKYYASTIDLTGGK+TRALFGI
Sbjct: 98 SAFCYEELILSQPTVPLYHLAYADVLYTLGGLENLQMAKKYYASTIDLTGGKSTRALFGI 157
Query: 425 CLCTSAIAQLSKGKSKEEKEGSQLQSLAAKALEKDYKQRAPDKLPQLTSALKSLTL 258
CLCTSAIAQLSKG+SKE+KE S+LQSL+A ALEKDYKQRAP L L+S L+SL +
Sbjct: 158 CLCTSAIAQLSKGRSKEDKESSELQSLSAMALEKDYKQRAPSNLSVLSSTLRSLKI 213
>ref|NP_683529.1| auxin-regulated protein; protein id: At3g04830.1, supported by
cDNA: 38917. [Arabidopsis thaliana]
gi|12322855|gb|AAG51417.1|AC009465_17 unknown protein;
78656-75813 [Arabidopsis thaliana]
gi|21593432|gb|AAM65399.1| contains similarity to
O-linked GlcNAc transferases [Arabidopsis thaliana]
gi|25082773|gb|AAN72000.1| expressed protein
[Arabidopsis thaliana]
Length = 303
Score = 174 bits (442), Expect = 6e-43
Identities = 87/119 (73%), Positives = 105/119 (88%), Gaps = 2/119 (1%)
Frame = -2
Query: 605 AAFCYEELMLAQPTVPLYHLAYADVLYTIGGLENLQTAKKYYASTIDLTGGKNTRALFGI 426
AAFCYEEL+L QPT+PLYHLAYADVLYTIGGLENL A+KYYA+TIDLTGGK+TRAL GI
Sbjct: 185 AAFCYEELILTQPTLPLYHLAYADVLYTIGGLENLIAARKYYAATIDLTGGKSTRALLGI 244
Query: 425 CLCTSAIAQLSKGKSKEEKE--GSQLQSLAAKALEKDYKQRAPDKLPQLTSALKSLTLS 255
CLC SAIAQ+SKG++KE+K+ +LQSLAA ALE++YKQ+AP KL LTSAL++L ++
Sbjct: 245 CLCGSAIAQISKGRNKEDKDMAAPELQSLAATALEREYKQKAPAKLNLLTSALRNLKIA 303
>ref|NP_566239.2| auxin-regulated protein; protein id: At3g04830.2, supported by
cDNA: gi_13877748, supported by cDNA: gi_15293268
[Arabidopsis thaliana]
gi|13877749|gb|AAK43952.1|AF370137_1 unknown protein
[Arabidopsis thaliana] gi|15293269|gb|AAK93745.1|
unknown protein [Arabidopsis thaliana]
Length = 299
Score = 174 bits (442), Expect = 6e-43
Identities = 87/119 (73%), Positives = 105/119 (88%), Gaps = 2/119 (1%)
Frame = -2
Query: 605 AAFCYEELMLAQPTVPLYHLAYADVLYTIGGLENLQTAKKYYASTIDLTGGKNTRALFGI 426
AAFCYEEL+L QPT+PLYHLAYADVLYTIGGLENL A+KYYA+TIDLTGGK+TRAL GI
Sbjct: 181 AAFCYEELILTQPTLPLYHLAYADVLYTIGGLENLIAARKYYAATIDLTGGKSTRALLGI 240
Query: 425 CLCTSAIAQLSKGKSKEEKE--GSQLQSLAAKALEKDYKQRAPDKLPQLTSALKSLTLS 255
CLC SAIAQ+SKG++KE+K+ +LQSLAA ALE++YKQ+AP KL LTSAL++L ++
Sbjct: 241 CLCGSAIAQISKGRNKEDKDMAAPELQSLAATALEREYKQKAPAKLNLLTSALRNLKIA 299
>gb|AAD49104.1|AF177535_8 contains similarity to O-linked GlcNAc transferases [Arabidopsis
thaliana] gi|28393702|gb|AAO42263.1| unknown protein
[Arabidopsis thaliana]
Length = 303
Score = 174 bits (440), Expect = 1e-42
Identities = 84/117 (71%), Positives = 105/117 (88%), Gaps = 3/117 (2%)
Frame = -2
Query: 605 AAFCYEELMLAQPTVPLYHLAYADVLYTIGGLENLQTAKKYYASTIDLTGGKNTRALFGI 426
AAFCYEEL+L+QPTVPLYHLAYA+VLYTIGG+EN+ +A+KYYA+T+DLTGGKNTRAL GI
Sbjct: 185 AAFCYEELILSQPTVPLYHLAYAEVLYTIGGVENIISARKYYAATVDLTGGKNTRALLGI 244
Query: 425 CLCTSAIAQLSKGKSKEEKEGS---QLQSLAAKALEKDYKQRAPDKLPQLTSALKSL 264
CLC SAIAQLSKG++KE+K+ + +L SLAA A+EK+YKQ+APDKL ++SAL+ L
Sbjct: 245 CLCASAIAQLSKGRNKEDKDATAAPELHSLAAAAVEKEYKQKAPDKLQLISSALRIL 301
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,219,046
Number of Sequences: 1393205
Number of extensions: 9390234
Number of successful extensions: 22504
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 21847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22487
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
