Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003580A_C01 KMC003580A_c01
(482 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187445.1| putative RHO GDP-dissociation inhibitor 1; prot... 149 2e-35
ref|NP_176435.1| rho GDP-dissociation inhibitor, putative; prote... 146 1e-34
gb|AAD43603.1|AC005698_2 T3P18.2 [Arabidopsis thaliana] gi|79402... 146 1e-34
ref|NP_172671.1| putative GDP-dissociation inhibitor; protein id... 134 7e-31
dbj|BAB90310.1| putative Rho GDP-dissociation inhibitor [Oryza s... 129 1e-29
>ref|NP_187445.1| putative RHO GDP-dissociation inhibitor 1; protein id: At3g07880.1,
supported by cDNA: 15496., supported by cDNA:
gi_15866273 [Arabidopsis thaliana]
gi|21759146|sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation
inhibitor 1 (Rho GDI-1)
gi|6648200|gb|AAF21198.1|AC013483_22 putative RHO
GDP-dissociation inhibitor 1 [Arabidopsis thaliana]
gi|15866274|gb|AAL10299.1|AF412276_1 Rho
GDP-dissociation inhibitor 1 [Arabidopsis thaliana]
gi|21553639|gb|AAM62732.1| putative RHO GDP-dissociation
inhibitor 1 [Arabidopsis thaliana]
gi|26451537|dbj|BAC42866.1| putative RHO
GDP-dissociation inhibitor 1 [Arabidopsis thaliana]
gi|28973347|gb|AAO63998.1| putative RHO GDP-dissociation
inhibitor 1 [Arabidopsis thaliana]
Length = 240
Score = 149 bits (375), Expect = 2e-35
Identities = 66/80 (82%), Positives = 74/80 (92%)
Frame = -1
Query: 482 VSGLKYTNTVWKTGIKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGIFARGTYSARTKFV 303
VSGL+YTNTVWKTG+KVD KEM+GTFSPQ EPY H MPEETTPSG+FARG+YSARTKF+
Sbjct: 158 VSGLRYTNTVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFL 217
Query: 302 DDDNKMYLEINYTFDIRKDW 243
DDDNK YLEINY+FDIRK+W
Sbjct: 218 DDDNKCYLEINYSFDIRKEW 237
>ref|NP_176435.1| rho GDP-dissociation inhibitor, putative; protein id: At1g62450.1
[Arabidopsis thaliana] gi|7488300|pir||T01457 rho
protein GDP-dissociation inhibitor homolog F24O1.19 -
Arabidopsis thaliana
Length = 223
Score = 146 bits (368), Expect = 1e-34
Identities = 66/80 (82%), Positives = 72/80 (89%)
Frame = -1
Query: 482 VSGLKYTNTVWKTGIKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGIFARGTYSARTKFV 303
VSGL+Y NTVWKTG+KVDSTK M+GTFSPQAE Y H MPEE TPSG+FARG+YSARTKF+
Sbjct: 143 VSGLRYNNTVWKTGVKVDSTKAMLGTFSPQAESYQHVMPEEMTPSGMFARGSYSARTKFI 202
Query: 302 DDDNKMYLEINYTFDIRKDW 243
DDDNK YLEINYTFDIRK W
Sbjct: 203 DDDNKCYLEINYTFDIRKSW 222
>gb|AAD43603.1|AC005698_2 T3P18.2 [Arabidopsis thaliana] gi|7940284|gb|AAF70843.1|AC003113_10
F24O1.20 [Arabidopsis thaliana]
Length = 236
Score = 146 bits (368), Expect = 1e-34
Identities = 66/80 (82%), Positives = 72/80 (89%)
Frame = -1
Query: 482 VSGLKYTNTVWKTGIKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGIFARGTYSARTKFV 303
VSGL+Y NTVWKTG+KVDSTK M+GTFSPQAE Y H MPEE TPSG+FARG+YSARTKF+
Sbjct: 156 VSGLRYNNTVWKTGVKVDSTKAMLGTFSPQAESYQHVMPEEMTPSGMFARGSYSARTKFI 215
Query: 302 DDDNKMYLEINYTFDIRKDW 243
DDDNK YLEINYTFDIRK W
Sbjct: 216 DDDNKCYLEINYTFDIRKSW 235
>ref|NP_172671.1| putative GDP-dissociation inhibitor; protein id: At1g12070.1
[Arabidopsis thaliana] gi|25345328|pir||A86256
hypothetical protein [imported] - Arabidopsis thaliana
gi|3157927|gb|AAC17610.1| Contains similarity to
GDP-dissociation inhibitor gb|L07918 from Mus musculus.
[Arabidopsis thaliana] gi|24430116|gb|AAM97312.1| Rho
GDP-dissociation inhibitor 2b [Arabidopsis thaliana]
Length = 223
Score = 134 bits (336), Expect = 7e-31
Identities = 61/81 (75%), Positives = 71/81 (87%)
Frame = -1
Query: 482 VSGLKYTNTVWKTGIKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGIFARGTYSARTKFV 303
VSGL+Y+NTVWKTGIKV S KEM+GTFSPQAEPYTH M EET PSG+ RG+YS ++KFV
Sbjct: 143 VSGLQYSNTVWKTGIKVYSRKEMLGTFSPQAEPYTHVMFEETAPSGLLVRGSYSVKSKFV 202
Query: 302 DDDNKMYLEINYTFDIRKDWV 240
DDDN+ YLE NYTFDIRK+W+
Sbjct: 203 DDDNQCYLENNYTFDIRKNWL 223
>dbj|BAB90310.1| putative Rho GDP-dissociation inhibitor [Oryza sativa (japonica
cultivar-group)]
Length = 217
Score = 129 bits (325), Expect = 1e-29
Identities = 57/80 (71%), Positives = 71/80 (88%)
Frame = -1
Query: 482 VSGLKYTNTVWKTGIKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGIFARGTYSARTKFV 303
VSGLKYTNTVWKTG++V++ K M+GTFSPQ EPYT+E EETTP+G+FARG+YSA+ KFV
Sbjct: 134 VSGLKYTNTVWKTGVRVENQKVMLGTFSPQLEPYTYEGEEETTPAGMFARGSYSAKLKFV 193
Query: 302 DDDNKMYLEINYTFDIRKDW 243
DDD K YLE++Y F+IRK+W
Sbjct: 194 DDDGKCYLEMSYYFEIRKEW 213
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,034,473
Number of Sequences: 1393205
Number of extensions: 7693128
Number of successful extensions: 38733
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 21582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33266
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
