Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003579A_C01 KMC003579A_c01
(1138 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC10193.1| 40S ribosomal protein S6 [Oryza sativa (japonica... 455 e-127
sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6 gi|7649387|emb|CAB8... 453 e-126
gb|AAG02240.1|AF295599_1 ribosomal protein s6 RPS6-2 [Zea mays] 452 e-126
pir||T04334 ribosomal protein S6.1, cytosolic - maize gi|1917019... 451 e-125
ref|NP_196598.1| 40S ribsomal protein S6; protein id: At5g10360.... 441 e-123
>dbj|BAC10193.1| 40S ribosomal protein S6 [Oryza sativa (japonica cultivar-group)]
Length = 250
Score = 455 bits (1170), Expect = e-127
Identities = 230/247 (93%), Positives = 236/247 (95%)
Frame = -3
Query: 1073 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 894
MKFNIANPTTGCQKKLEIDDD KLRAF+DKRISQEV GDALGEEFKGYVFKI GGCDKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 893 FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGD 714
FPMKQGVLT GRVRLLLHRGTPCFRGYGRR+GERRRKSVRGCIVS DLSV+NLVIVKKG+
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120
Query: 713 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 534
NDLPGLTD EKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRR FTTKNGKKVSKAPKI
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSKAPKI 180
Query: 533 QRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLS 354
QRLVTPLTLQRKRARIADKKKRIAK KSEAAEYQKLLA RLKEQRERRSESLAKRRSKLS
Sbjct: 181 QRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRSKLS 240
Query: 353 TASKPTA 333
+A+K A
Sbjct: 241 SAAKAAA 247
>sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6 gi|7649387|emb|CAB89081.1| S6 ribosomal
protein [Asparagus officinalis]
Length = 251
Score = 453 bits (1165), Expect = e-126
Identities = 227/247 (91%), Positives = 236/247 (94%)
Frame = -3
Query: 1073 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 894
MKFNIANPTTGCQKKLEIDDD KLRAF+DKRISQEV GDALGEEFKGYVFKI GGCDKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 893 FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGD 714
FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKG+
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120
Query: 713 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 534
NDLPGLTDVEKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRR FT K GK SKAPKI
Sbjct: 121 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKI 180
Query: 533 QRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLS 354
QRLVTPLTLQRKRARIA+KKKR+AKAKSEAAEYQKLLASRLKEQR+RRSESLAK+RS+LS
Sbjct: 181 QRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRLS 240
Query: 353 TASKPTA 333
A+ TA
Sbjct: 241 AAAAKTA 247
>gb|AAG02240.1|AF295599_1 ribosomal protein s6 RPS6-2 [Zea mays]
Length = 251
Score = 452 bits (1163), Expect = e-126
Identities = 227/247 (91%), Positives = 236/247 (94%)
Frame = -3
Query: 1073 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 894
MKFNIANP+TGCQKKLEIDDD KLRAF+D+RISQEV GDALGEEFKGYVFKI GGCDKQG
Sbjct: 1 MKFNIANPSTGCQKKLEIDDDQKLRAFYDRRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 893 FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGD 714
FPMKQGVLT GRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVS DLSV+NLVIVKKG+
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVINLVIVKKGE 120
Query: 713 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 534
NDLPGLTD EKPRMRGPKRASKIRKLFNL+KDDDVRKYVNTYRR FTTKNGKKVSKAPKI
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKI 180
Query: 533 QRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLS 354
QRLVTPLTLQRKRARIADKKKRIAK KSEAAEYQKLLA RLKEQR+RRSESLAKRRSKLS
Sbjct: 181 QRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRDRRSESLAKRRSKLS 240
Query: 353 TASKPTA 333
A+K +A
Sbjct: 241 AAAKASA 247
>pir||T04334 ribosomal protein S6.1, cytosolic - maize gi|1917019|gb|AAB51304.1|
ribosomal protein S6 RPS6-1 [Zea mays]
Length = 251
Score = 451 bits (1159), Expect = e-125
Identities = 226/247 (91%), Positives = 235/247 (94%)
Frame = -3
Query: 1073 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 894
MKFNIANP+TGCQKKLEIDDD KLRAF+D+RISQEV GDALGEEFKGYVFKI GGCDKQG
Sbjct: 1 MKFNIANPSTGCQKKLEIDDDQKLRAFYDRRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 893 FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGD 714
FPMKQGVLT GRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVS DLSV+NLVIVKKG+
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVINLVIVKKGE 120
Query: 713 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 534
NDLPGLTD EKPRMRGPKRASKIRKLFNL+KDDDVRKYVNTYRR FTTKNGKKVSKAPKI
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLNKDDDVRKYVNTYRRTFTTKNGKKVSKAPKI 180
Query: 533 QRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLS 354
QRLVTPLTLQRKRARIADKKKRI K KSEAAEYQKLLA RLKEQR+RRSESLAKRRSKLS
Sbjct: 181 QRLVTPLTLQRKRARIADKKKRITKKKSEAAEYQKLLAQRLKEQRDRRSESLAKRRSKLS 240
Query: 353 TASKPTA 333
A+K +A
Sbjct: 241 AAAKASA 247
>ref|NP_196598.1| 40S ribsomal protein S6; protein id: At5g10360.1, supported by cDNA:
gi_15010585, supported by cDNA: gi_16323060, supported by
cDNA: gi_20147378 [Arabidopsis thaliana]
gi|21542430|sp|P51430|RS6_ARATH 40S ribosomal protein S6
gi|11276585|pir||T50003 40S ribsomal protein S6 -
Arabidopsis thaliana gi|7671467|emb|CAB89407.1| 40S
ribsomal protein S6 [Arabidopsis thaliana]
gi|15010586|gb|AAK73952.1| AT5g10360/F12B17_290
[Arabidopsis thaliana] gi|16323061|gb|AAL15265.1|
AT5g10360/F12B17_290 [Arabidopsis thaliana]
gi|20147379|gb|AAM10399.1| AT5g10360/F12B17_290
[Arabidopsis thaliana]
Length = 249
Score = 441 bits (1135), Expect = e-123
Identities = 222/248 (89%), Positives = 235/248 (94%), Gaps = 1/248 (0%)
Frame = -3
Query: 1073 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQG 894
MKFN+ANPTTGCQKKLEIDDD KLRAF+DKR+SQEV GDALGEEFKGYVFKI GGCDKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 893 FPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGD 714
FPMKQGVLTPGRVRLLLHRGTPCFRG+GRR GERRRKSVRGCIVSPDLSVLNLVIVKKG
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120
Query: 713 NDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKI 534
+DLPGLTD EKPRMRGPKRASKIRKLFNL K+DDVRKYVNTYRR FT K GKKVSKAPKI
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKI 180
Query: 533 QRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLS 354
QRLVTPLTLQRKRARIADKKKRIAKA S+AA+YQKLLASRLKEQR+RRSESLAK+RS+LS
Sbjct: 181 QRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240
Query: 353 TA-SKPTA 333
+A +KP A
Sbjct: 241 SAPAKPVA 248
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 974,384,752
Number of Sequences: 1393205
Number of extensions: 21791645
Number of successful extensions: 65526
Number of sequences better than 10.0: 232
Number of HSP's better than 10.0 without gapping: 60579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65090
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 69458271366
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
