Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003577A_C01 KMC003577A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O82531|PSB1_PETHY Proteasome subunit beta type 1 (20S proteas... 141 5e-33
sp|O64464|PSB1_ORYSA Proteasome subunit beta type 1 (20S proteas... 132 4e-30
emb|CAA47753.1| proteosome subunit [Arabidopsis thaliana] 130 2e-29
ref|NP_191641.1| 20S proteasome beta subunit F1 (PBF1); protein ... 130 2e-29
emb|CAC43327.1| putative beta6 proteasome subunit [Nicotiana tab... 97 1e-19
>sp|O82531|PSB1_PETHY Proteasome subunit beta type 1 (20S proteasome alpha subunit F)
(20S proteasome subunit beta-6)
gi|3608485|gb|AAC35983.1| proteasome beta subunit
[Petunia x hybrida]
Length = 223
Score = 141 bits (356), Expect = 5e-33
Identities = 72/77 (93%), Positives = 74/77 (95%)
Frame = -1
Query: 576 GSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSETEAVDLVKTVFASATERDIYTGDKLEIV 397
GSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSE EA+DLVKT FASATERDIYTGD+LEIV
Sbjct: 147 GSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAIDLVKTCFASATERDIYTGDRLEIV 206
Query: 396 ILNASGIRREYMELRKD 346
ILNASGIRRE MELRKD
Sbjct: 207 ILNASGIRREEMELRKD 223
>sp|O64464|PSB1_ORYSA Proteasome subunit beta type 1 (20S proteasome alpha subunit F)
(20S proteasome subunit beta-6)
gi|3138799|dbj|BAA28276.1| beta 6 subunit of 20S
proteasome [Oryza sativa (japonica cultivar-group)]
Length = 221
Score = 132 bits (331), Expect = 4e-30
Identities = 65/77 (84%), Positives = 72/77 (93%)
Frame = -1
Query: 576 GSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSETEAVDLVKTVFASATERDIYTGDKLEIV 397
GS LIMP LDNQLKSPSPLLLPA+DAVTPLSETEAVDLVK VFASATERDIYTGDKLEIV
Sbjct: 145 GSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATERDIYTGDKLEIV 204
Query: 396 ILNASGIRREYMELRKD 346
++N +G +REY++LRKD
Sbjct: 205 VINKAGTKREYIDLRKD 221
>emb|CAA47753.1| proteosome subunit [Arabidopsis thaliana]
Length = 230
Score = 130 bits (326), Expect = 2e-29
Identities = 66/77 (85%), Positives = 70/77 (90%)
Frame = -1
Query: 576 GSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSETEAVDLVKTVFASATERDIYTGDKLEIV 397
GSTLIMPFLDNQLKSPSPLLLP QD+ TPLSE EAVDLVKTVFASATERDIYTGDKLEI+
Sbjct: 154 GSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVFASATERDIYTGDKLEIM 213
Query: 396 ILNASGIRREYMELRKD 346
IL A GI+ E M+LRKD
Sbjct: 214 ILKADGIKTELMDLRKD 230
>ref|NP_191641.1| 20S proteasome beta subunit F1 (PBF1); protein id: At3g60820.1,
supported by cDNA: 26273., supported by cDNA:
gi_17065427, supported by cDNA: gi_20148484, supported
by cDNA: gi_3421119 [Arabidopsis thaliana]
gi|12643281|sp|P42742|PSB1_ARATH Proteasome subunit beta
type 1 (20S proteasome alpha subunit F) (Proteasome
component C5) (TAS-F22/FAFP98) gi|11358715|pir||T47893 C
3.4.25.1 proteasome endopeptidase complex () chain PBF1
[imported] - Arabidopsis thaliana
gi|577531|emb|CAA56201.1| proteasome subunit
[Arabidopsis thaliana] gi|3421120|gb|AAC32073.1| 20S
proteasome beta subunit PBF1 [Arabidopsis thaliana]
gi|7329692|emb|CAB82686.1| proteasome component C5
[Arabidopsis thaliana] gi|17065428|gb|AAL32868.1|
proteasome component C5 [Arabidopsis thaliana]
gi|20148485|gb|AAM10133.1| proteasome component C5
[Arabidopsis thaliana] gi|21554745|gb|AAM63678.1|
proteasome component C5 [Arabidopsis thaliana]
Length = 223
Score = 130 bits (326), Expect = 2e-29
Identities = 66/77 (85%), Positives = 70/77 (90%)
Frame = -1
Query: 576 GSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSETEAVDLVKTVFASATERDIYTGDKLEIV 397
GSTLIMPFLDNQLKSPSPLLLP QD+ TPLSE EAVDLVKTVFASATERDIYTGDKLEI+
Sbjct: 147 GSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVFASATERDIYTGDKLEIM 206
Query: 396 ILNASGIRREYMELRKD 346
IL A GI+ E M+LRKD
Sbjct: 207 ILKADGIKTELMDLRKD 223
>emb|CAC43327.1| putative beta6 proteasome subunit [Nicotiana tabacum]
Length = 192
Score = 97.4 bits (241), Expect = 1e-19
Identities = 48/54 (88%), Positives = 51/54 (93%)
Frame = -1
Query: 576 GSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSETEAVDLVKTVFASATERDIYTG 415
GSTLIMPFLD QLKSPSPLLLPA+DAVTPLSE+EA+DLVKT F SATERDIYTG
Sbjct: 139 GSTLIMPFLDYQLKSPSPLLLPAKDAVTPLSESEAIDLVKTCFVSATERDIYTG 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,997,431
Number of Sequences: 1393205
Number of extensions: 9314778
Number of successful extensions: 22839
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 22173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22808
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
