Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003576A_C01 KMC003576A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC40990.1| ABC1 protein [Nicotiana plumbaginifolia] 149 2e-35
emb|CAD59566.1| PDR-like ABC transporter [Oryza sativa (japonica... 147 7e-35
dbj|BAB21275.1| putative ABC transporter protein [Oryza sativa (... 147 7e-35
emb|CAD59568.1| PDR-like ABC transporter [Oryza sativa (japonica... 147 9e-35
dbj|BAB21276.1| putative ABC transporter protein [Oryza sativa (... 147 9e-35
>emb|CAC40990.1| ABC1 protein [Nicotiana plumbaginifolia]
Length = 1436
Score = 149 bits (376), Expect = 2e-35
Identities = 61/100 (61%), Positives = 79/100 (79%)
Frame = -2
Query: 571 IWNLFSGFVVPRPSIPVWWRWYYWACPVAWTIYGLIASQFGDITTVMDTEGGKTVKMFLE 392
+WNLFSGF+VPRP IP+WWRWYYW CP+AWT+YGL+ASQFGD+ + T+ +TV+ FL
Sbjct: 1338 VWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQDPL-TDQNQTVEQFLR 1396
Query: 391 DYYGIKHSFIGVCAVVVPGVAILFAFIFAVAIKAFNFQKR 272
+G KH F+GV A V+ A++FAF FA+ IKAFNFQ+R
Sbjct: 1397 SNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
Score = 41.2 bits (95), Expect = 0.009
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Frame = -2
Query: 553 GFVVPRPSIPVWWRWYYWACPVAWTIYGLIASQFGDITTVMDTEGGK--------TVKMF 398
GF++ R + WW W YW P+ +++ ++ ++F GG + F
Sbjct: 696 GFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGGTEPLGAAVVRARGF 755
Query: 397 LEDYYGIKHSFIGVCAVVVPGVAILFAFIFAVAIKAFN-FQKR*ITVFPKPEDS 239
D Y +IGV A+ G ++F ++VA+ N F K T+ + E++
Sbjct: 756 FPDAYWY---WIGVGALA--GFIVMFNIAYSVALAYLNPFDKPQATISDESENN 804
>emb|CAD59566.1| PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)]
gi|28144345|tpg|DAA00885.1| TPA: PDR2 ABC transporter
[Oryza sativa (japonica cultivar-group)]
Length = 1464
Score = 147 bits (372), Expect = 7e-35
Identities = 63/100 (63%), Positives = 78/100 (78%)
Frame = -2
Query: 571 IWNLFSGFVVPRPSIPVWWRWYYWACPVAWTIYGLIASQFGDITTVMDTEGGKTVKMFLE 392
IWNLFSGF++PRP +P+WWRWY W CPVAWT+YGL+ASQFGDI T MD G VK+F+E
Sbjct: 1367 IWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDIMTPMD--DGTPVKIFVE 1424
Query: 391 DYYGIKHSFIGVCAVVVPGVAILFAFIFAVAIKAFNFQKR 272
+Y+ KHS++GV AVV+ +LFAF+F AI NFQKR
Sbjct: 1425 NYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464
Score = 34.7 bits (78), Expect = 0.87
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -2
Query: 571 IWNLFSGFVVPRPSIPVWWRWYYWACPVAWTIYGLIASQF 452
I+ + GF++ R + WW W YW P+ + + ++F
Sbjct: 698 IFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEF 737
>dbj|BAB21275.1| putative ABC transporter protein [Oryza sativa (japonica
cultivar-group)]
Length = 1447
Score = 147 bits (372), Expect = 7e-35
Identities = 63/100 (63%), Positives = 78/100 (78%)
Frame = -2
Query: 571 IWNLFSGFVVPRPSIPVWWRWYYWACPVAWTIYGLIASQFGDITTVMDTEGGKTVKMFLE 392
IWNLFSGF++PRP +P+WWRWY W CPVAWT+YGL+ASQFGDI T MD G VK+F+E
Sbjct: 1350 IWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDIMTPMD--DGTPVKIFVE 1407
Query: 391 DYYGIKHSFIGVCAVVVPGVAILFAFIFAVAIKAFNFQKR 272
+Y+ KHS++GV AVV+ +LFAF+F AI NFQKR
Sbjct: 1408 NYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1447
Score = 34.7 bits (78), Expect = 0.87
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -2
Query: 571 IWNLFSGFVVPRPSIPVWWRWYYWACPVAWTIYGLIASQF 452
I+ + GF++ R + WW W YW P+ + + ++F
Sbjct: 692 IFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEF 731
>emb|CAD59568.1| PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)]
gi|28144343|tpg|DAA00886.1| TPA: PDR3 ABC transporter
[Oryza sativa (japonica cultivar-group)]
Length = 1457
Score = 147 bits (371), Expect = 9e-35
Identities = 65/100 (65%), Positives = 77/100 (77%)
Frame = -2
Query: 571 IWNLFSGFVVPRPSIPVWWRWYYWACPVAWTIYGLIASQFGDITTVMDTEGGKTVKMFLE 392
IWNLFSGFV+PRP +P+WWRWY WACPVAWT+YGL+ SQFGDI T M E G VK+F+E
Sbjct: 1360 IWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPM--EDGTPVKVFVE 1417
Query: 391 DYYGIKHSFIGVCAVVVPGVAILFAFIFAVAIKAFNFQKR 272
+Y+G KHS++G A VV A LFA +F AI FNFQKR
Sbjct: 1418 NYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
Score = 33.9 bits (76), Expect = 1.5
Identities = 25/101 (24%), Positives = 48/101 (46%), Gaps = 9/101 (8%)
Frame = -2
Query: 571 IWNLFSGFVVPRPSIPVWWRWYYWACPV-----AWTIYGLIASQFGDITTVMDTEGGKTV 407
I+ + GF++ R + WW W YW P+ A ++ L+ + I V + +T+
Sbjct: 689 IFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKI--VNSSASNETL 746
Query: 406 KMFLEDYYGI----KHSFIGVCAVVVPGVAILFAFIFAVAI 296
+ + G+ + +IG A++ G ILF +F +A+
Sbjct: 747 GVQVLKSRGVFPEARWYWIGFGAMI--GFTILFNALFTLAL 785
>dbj|BAB21276.1| putative ABC transporter protein [Oryza sativa (japonica
cultivar-group)]
Length = 1432
Score = 147 bits (371), Expect = 9e-35
Identities = 65/100 (65%), Positives = 77/100 (77%)
Frame = -2
Query: 571 IWNLFSGFVVPRPSIPVWWRWYYWACPVAWTIYGLIASQFGDITTVMDTEGGKTVKMFLE 392
IWNLFSGFV+PRP +P+WWRWY WACPVAWT+YGL+ SQFGDI T M E G VK+F+E
Sbjct: 1335 IWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPM--EDGTPVKVFVE 1392
Query: 391 DYYGIKHSFIGVCAVVVPGVAILFAFIFAVAIKAFNFQKR 272
+Y+G KHS++G A VV A LFA +F AI FNFQKR
Sbjct: 1393 NYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1432
Score = 33.9 bits (76), Expect = 1.5
Identities = 25/101 (24%), Positives = 48/101 (46%), Gaps = 9/101 (8%)
Frame = -2
Query: 571 IWNLFSGFVVPRPSIPVWWRWYYWACPV-----AWTIYGLIASQFGDITTVMDTEGGKTV 407
I+ + GF++ R + WW W YW P+ A ++ L+ + I V + +T+
Sbjct: 689 IFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKI--VNSSASNETL 746
Query: 406 KMFLEDYYGI----KHSFIGVCAVVVPGVAILFAFIFAVAI 296
+ + G+ + +IG A++ G ILF +F +A+
Sbjct: 747 GVQVLKSRGVFPEARWYWIGFGAMI--GFTILFNALFTLAL 785
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,641,887
Number of Sequences: 1393205
Number of extensions: 11939547
Number of successful extensions: 34478
Number of sequences better than 10.0: 143
Number of HSP's better than 10.0 without gapping: 32629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34366
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
