Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003575A_C01 KMC003575A_c01
(712 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD56217.1| transcription factor EREBP-like protein [Cicer a... 196 3e-49
emb|CAD21849.1| ethylene responsive element binding protein [Fag... 194 1e-48
ref|NP_683565.1| AP2 domain protein RAP2.2; protein id: At3g1423... 192 4e-48
gb|AAM62802.1| DNA-binding protein [Arabidopsis thaliana] 190 2e-47
ref|NP_566482.1| AP2 domain protein RAP2.2; protein id: At3g1423... 190 2e-47
>emb|CAD56217.1| transcription factor EREBP-like protein [Cicer arietinum]
Length = 344
Score = 196 bits (498), Expect = 3e-49
Identities = 101/135 (74%), Positives = 109/135 (79%), Gaps = 2/135 (1%)
Frame = +3
Query: 300 GFREFKDDSDFEEEEEDDDVAQDLLAGAKGFAFSATAAAKTKRSNSFSKGSTAAKSV--E 473
GFREFKDDSDF+E+EEDDD + LL G KGF FS+ TK +FS+GSTAAKSV +
Sbjct: 1 GFREFKDDSDFDEDEEDDDDDEGLLVGGKGFTFSSN---NTKSFKTFSRGSTAAKSVSPK 57
Query: 474 SNEQAEKYASKKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVGLGTFKTAEEAARAYDAEA 653
SNEQAEK +KRKNQYRGIRQRPWGKWAAEIRDPRKGVRV LGTF TAEEAARAYDAEA
Sbjct: 58 SNEQAEKACKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEA 117
Query: 654 RRIRGNKGNVTFPVE 698
RRIRG K V FP E
Sbjct: 118 RRIRGKKAKVNFPEE 132
>emb|CAD21849.1| ethylene responsive element binding protein [Fagus sylvatica]
Length = 375
Score = 194 bits (493), Expect = 1e-48
Identities = 113/184 (61%), Positives = 121/184 (65%), Gaps = 6/184 (3%)
Frame = +3
Query: 162 MCGGAIISDFIPAAAAGSRRVTADILWPNLKKPNSRSML------LDDDFEAGFREFKDD 323
MCGGAIISDFI A GSRR+TAD LW + KKP S LDD+FE F+ FKD
Sbjct: 1 MCGGAIISDFI--APTGSRRLTADYLWGDRKKPISGKRFSKPVVDLDDEFELDFQGFKD- 57
Query: 324 SDFEEEEEDDDVAQDLLAGAKGFAFSATAAAKTKRSNSFSKGSTAAKSVESNEQAEKYAS 503
EEE D D + L+ K F FSA S GS KSVE N QAEK A
Sbjct: 58 ----EEESDIDEEEVLVQDVKPFTFSAPP----------SSGSKPVKSVEFNGQAEKSAK 103
Query: 504 KKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVGLGTFKTAEEAARAYDAEARRIRGNKGNV 683
+KRKNQYRGIRQRPWGKWAAEIRDPRKGVRV LGTF TAEEAARAYDAEARRIRG K
Sbjct: 104 RKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKSKG 163
Query: 684 TFPV 695
FP+
Sbjct: 164 NFPM 167
>ref|NP_683565.1| AP2 domain protein RAP2.2; protein id: At3g14230.2, supported by
cDNA: gi_15450917 [Arabidopsis thaliana]
gi|9279571|dbj|BAB01029.1| transcription factor
EREBP-like protein [Arabidopsis thaliana]
gi|15450918|gb|AAK96730.1| transcription factor
EREBP-like protein [Arabidopsis thaliana]
gi|23198332|gb|AAN15693.1| transcription factor
EREBP-like protein [Arabidopsis thaliana]
Length = 375
Score = 192 bits (488), Expect = 4e-48
Identities = 110/189 (58%), Positives = 124/189 (65%), Gaps = 10/189 (5%)
Frame = +3
Query: 162 MCGGAIISDFIPAAAAGSRRVTADILWPNLK--------KPNSRSML--LDDDFEAGFRE 311
MCGGAIISDFIP S RVT + +WP+LK + N RS LDDDFEA F+
Sbjct: 1 MCGGAIISDFIPPPR--SLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQG 58
Query: 312 FKDDSDFEEEEEDDDVAQDLLAGAKGFAFSATAAAKTKRSNSFSKGSTAAKSVESNEQAE 491
FKDDS F+ E++DD + K F F+AT S + A K+VES EQAE
Sbjct: 59 FKDDSAFDCEDDDD-----VFVNVKPFVFTATTKPVASAFVSTVGSAYAKKTVESAEQAE 113
Query: 492 KYASKKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVGLGTFKTAEEAARAYDAEARRIRGN 671
K + +KRKNQYRGIRQRPWGKWAAEIRDPRKG R LGTF TAEEAARAYDA ARRIRG
Sbjct: 114 KSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGT 173
Query: 672 KGNVTFPVE 698
K V FP E
Sbjct: 174 KAKVNFPEE 182
>gb|AAM62802.1| DNA-binding protein [Arabidopsis thaliana]
Length = 379
Score = 190 bits (482), Expect = 2e-47
Identities = 112/193 (58%), Positives = 128/193 (66%), Gaps = 14/193 (7%)
Frame = +3
Query: 162 MCGGAIISDFIPAAAAGSRRVTADILWPNLK--------KPNSRSML--LDDDFEAGFRE 311
MCGGAIISDFIP S RVT + +WP+LK + N RS LDDDFEA F+
Sbjct: 1 MCGGAIISDFIPPPR--SLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQG 58
Query: 312 FKDDSDFEEEEEDDDVAQDLLAGAKGFAFSATA---AAKTKRSNSFSKGST-AAKSVESN 479
FKDDS F+ E++DD + K F F+AT A+ + + GS A K+VES
Sbjct: 59 FKDDSAFDCEDDDD-----VFVNVKPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESA 113
Query: 480 EQAEKYASKKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVGLGTFKTAEEAARAYDAEARR 659
EQAEK + +KRKNQYRGIRQRPWGKWAAEIRDPRKG R LGTF TAEEAARAYDA ARR
Sbjct: 114 EQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARR 173
Query: 660 IRGNKGNVTFPVE 698
IRG K V FP E
Sbjct: 174 IRGTKAKVNFPEE 186
>ref|NP_566482.1| AP2 domain protein RAP2.2; protein id: At3g14230.1, supported by
cDNA: 158240. [Arabidopsis thaliana]
Length = 379
Score = 190 bits (482), Expect = 2e-47
Identities = 112/193 (58%), Positives = 128/193 (66%), Gaps = 14/193 (7%)
Frame = +3
Query: 162 MCGGAIISDFIPAAAAGSRRVTADILWPNLK--------KPNSRSML--LDDDFEAGFRE 311
MCGGAIISDFIP S RVT + +WP+LK + N RS LDDDFEA F+
Sbjct: 1 MCGGAIISDFIPPPR--SLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQG 58
Query: 312 FKDDSDFEEEEEDDDVAQDLLAGAKGFAFSATA---AAKTKRSNSFSKGST-AAKSVESN 479
FKDDS F+ E++DD + K F F+AT A+ + + GS A K+VES
Sbjct: 59 FKDDSAFDCEDDDD-----VFVNVKPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESA 113
Query: 480 EQAEKYASKKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVGLGTFKTAEEAARAYDAEARR 659
EQAEK + +KRKNQYRGIRQRPWGKWAAEIRDPRKG R LGTF TAEEAARAYDA ARR
Sbjct: 114 EQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARR 173
Query: 660 IRGNKGNVTFPVE 698
IRG K V FP E
Sbjct: 174 IRGTKAKVNFPEE 186
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 638,098,277
Number of Sequences: 1393205
Number of extensions: 14699140
Number of successful extensions: 122796
Number of sequences better than 10.0: 831
Number of HSP's better than 10.0 without gapping: 68411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99086
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
