Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003574A_C02 KMC003574A_c02
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC43323.1| putative alpha7 proteasome subunit [Nicotiana ta... 156 1e-37
sp|O24362|PSA3_SPIOL Proteasome subunit alpha type 3 (20S protea... 151 6e-36
sp|Q9LSU0|PSA3_ORYSA Proteasome subunit alpha type 3 (20S protea... 150 1e-35
ref|NP_180270.1| 20S proteasome alpha subunit G (PAG1); protein ... 148 5e-35
emb|CAA74027.1| multicatalytic endopeptidase complex, proteasome... 148 5e-35
>emb|CAC43323.1| putative alpha7 proteasome subunit [Nicotiana tabacum]
Length = 249
Score = 156 bits (395), Expect = 1e-37
Identities = 78/87 (89%), Positives = 82/87 (93%)
Frame = -1
Query: 566 SAIGKGRQAAKTEIEKLKLADMTCRQGVIEVAKIIYGVHDEAKDKDFELEMSWVCDESKR 387
+AIGKGRQAAKTEIEKLKL++MTCRQGVIEVAKIIYGVHDEAKDK FELE SWVCDES R
Sbjct: 163 AAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELETSWVCDESNR 222
Query: 386 QHEKVPDDLLEAAKAAAKAALEEMDAD 306
QH+KVP DLLE AKAAAKAALEEMDAD
Sbjct: 223 QHQKVPADLLEEAKAAAKAALEEMDAD 249
>sp|O24362|PSA3_SPIOL Proteasome subunit alpha type 3 (20S proteasome alpha subunit G)
(20S proteasome subunit alpha-7) (Proteasome component
C8) gi|7435886|pir||T09139 26S proteasome alpha chain -
spinach gi|2285802|dbj|BAA21651.1| 26S proteasome alpha
subunit [Spinacia oleracea]
Length = 249
Score = 151 bits (381), Expect = 6e-36
Identities = 72/87 (82%), Positives = 83/87 (94%)
Frame = -1
Query: 566 SAIGKGRQAAKTEIEKLKLADMTCRQGVIEVAKIIYGVHDEAKDKDFELEMSWVCDESKR 387
+AIGKG+QAAKTEIEKLKL++MTCR+G+IEVAKIIY VHDEAKDK FELEMSW+CDESKR
Sbjct: 163 AAIGKGKQAAKTEIEKLKLSEMTCREGIIEVAKIIYKVHDEAKDKAFELEMSWICDESKR 222
Query: 386 QHEKVPDDLLEAAKAAAKAALEEMDAD 306
+H+KVPD+LL+ AKAAA AALEEMDAD
Sbjct: 223 EHQKVPDNLLQEAKAAATAALEEMDAD 249
>sp|Q9LSU0|PSA3_ORYSA Proteasome subunit alpha type 3 (20S proteasome alpha subunit G)
(20S proteasome subunit alpha-7)
gi|8671500|dbj|BAA96833.1| alpha 7 subunit of 20S
proteasome [Oryza sativa (japonica cultivar-group)]
gi|18844761|dbj|BAB85232.1| proteasome subunit alpha
type 3 [Oryza sativa (japonica cultivar-group)]
gi|20160705|dbj|BAB89648.1| proteasome subunit alpha
type 3 [Oryza sativa (japonica cultivar-group)]
Length = 249
Score = 150 bits (379), Expect = 1e-35
Identities = 70/87 (80%), Positives = 82/87 (93%)
Frame = -1
Query: 566 SAIGKGRQAAKTEIEKLKLADMTCRQGVIEVAKIIYGVHDEAKDKDFELEMSWVCDESKR 387
+A+GKGRQAAKTEIEKLKL+++TCR+G++EVAKIIYGVHDEAKDK FELE+SW+CDES R
Sbjct: 163 AALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKAFELELSWICDESNR 222
Query: 386 QHEKVPDDLLEAAKAAAKAALEEMDAD 306
QH+KVP DLLE AK AA+AALEEMDAD
Sbjct: 223 QHQKVPADLLEQAKVAAQAALEEMDAD 249
>ref|NP_180270.1| 20S proteasome alpha subunit G (PAG1); protein id: At2g27020.1,
supported by cDNA: 8342., supported by cDNA:
gi_14030728, supported by cDNA: gi_3421095 [Arabidopsis
thaliana] gi|12644056|sp|O23715|PSA3_ARATH Proteasome
subunit alpha type 3 (20S proteasome alpha subunit G)
gi|25290056|pir||G84667 20S proteasome subunit C8
(PAG1/PRC8_ARATH) [imported] - Arabidopsis thaliana
gi|3421096|gb|AAC32064.1| 20S proteasome subunit PAG1
[Arabidopsis thaliana] gi|3885332|gb|AAC77860.1| 20S
proteasome alpha subunit G (PAG1) [Arabidopsis thaliana]
gi|14030729|gb|AAK53039.1|AF375455_1 At2g27020/T20P8.7
[Arabidopsis thaliana] gi|21617882|gb|AAM66932.1| 20S
proteasome subunit C8 (PAG1/PRC8_ARATH) [Arabidopsis
thaliana] gi|21700783|gb|AAM70515.1| At2g27020/T20P8.7
[Arabidopsis thaliana]
Length = 249
Score = 148 bits (373), Expect = 5e-35
Identities = 70/87 (80%), Positives = 81/87 (92%)
Frame = -1
Query: 566 SAIGKGRQAAKTEIEKLKLADMTCRQGVIEVAKIIYGVHDEAKDKDFELEMSWVCDESKR 387
+AIGKG+QAAKTEIEKL L++MTC++GVIEVAKIIY +HDEAKDK FELEMSW+C+ESKR
Sbjct: 163 AAIGKGKQAAKTEIEKLNLSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKR 222
Query: 386 QHEKVPDDLLEAAKAAAKAALEEMDAD 306
+H+KVPDDLLE AK AAK ALEEMDAD
Sbjct: 223 EHQKVPDDLLEEAKTAAKTALEEMDAD 249
>emb|CAA74027.1| multicatalytic endopeptidase complex, proteasome component, alpha
subunit [Arabidopsis thaliana]
Length = 249
Score = 148 bits (373), Expect = 5e-35
Identities = 70/87 (80%), Positives = 81/87 (92%)
Frame = -1
Query: 566 SAIGKGRQAAKTEIEKLKLADMTCRQGVIEVAKIIYGVHDEAKDKDFELEMSWVCDESKR 387
+AIGKG+QAAKTEIEKL L++MTC++GVIEVAKIIY +HDEAKDK FELEMSW+C+ESKR
Sbjct: 163 AAIGKGKQAAKTEIEKLNLSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKR 222
Query: 386 QHEKVPDDLLEAAKAAAKAALEEMDAD 306
+H+KVPDDLLE AK AAK ALEEMDAD
Sbjct: 223 EHQKVPDDLLEEAKTAAKTALEEMDAD 249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,221,281
Number of Sequences: 1393205
Number of extensions: 8577359
Number of successful extensions: 20144
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 19551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20116
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
