Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003573A_C01 KMC003573A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197436.1| RNA binding protein 45 (RBP45), putative; prote... 102 3e-21
ref|NP_518850.1| PROBABLE SERINE HYDROXYMETHYLTRANSFERASE PROTEI... 32 4.9
gb|ZP_00023463.1| hypothetical protein [Ralstonia metallidurans] 32 4.9
>ref|NP_197436.1| RNA binding protein 45 (RBP45), putative; protein id: At5g19350.1,
supported by cDNA: gi_18377730, supported by cDNA:
gi_21281188 [Arabidopsis thaliana]
gi|18377731|gb|AAL67015.1| putative DNA binding protein
ACBF [Arabidopsis thaliana] gi|21281189|gb|AAM45052.1|
putative DNA binding protein ACBF [Arabidopsis thaliana]
Length = 425
Score = 102 bits (253), Expect = 3e-21
Identities = 53/86 (61%), Positives = 60/86 (69%), Gaps = 7/86 (8%)
Frame = -3
Query: 491 YAYGATHDPSLYAYAGYA--QYPQQVEGAQDVSATME-----QRDKLYDPLAMPDVDKLN 333
YAYGAT DPS+YAY GY QYPQQ EG QD+S + +LYDPLA PDVDKLN
Sbjct: 337 YAYGATQDPSVYAYGGYGYPQYPQQGEGTQDISNSAAGGVAGAEQELYDPLATPDVDKLN 396
Query: 332 AAYLSVHGSAILGKSLWHSTYSSSLQ 255
AAYLSVH SAILG+ +W T S + Q
Sbjct: 397 AAYLSVHASAILGRPMWQRTSSLTSQ 422
>ref|NP_518850.1| PROBABLE SERINE HYDROXYMETHYLTRANSFERASE PROTEIN [Ralstonia
solanacearum] gi|20138216|sp|Q8Y1G1|GLA1_RALSO Serine
hydroxymethyltransferase 1 (Serine methylase 1) (SHMT 1)
gi|17427740|emb|CAD14259.1| PROBABLE SERINE
HYDROXYMETHYLTRANSFERASE PROTEIN [Ralstonia
solanacearum]
Length = 415
Score = 31.6 bits (70), Expect = 4.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 41 IRSIRWKTIVHYMLVSISLHQPTMSKVKKTLGSTHIRINRN 163
+R + +T H MLV + T + +K LG HI +N+N
Sbjct: 305 LRIVSGRTESHVMLVDLRAKSITGKEAEKVLGDAHITVNKN 345
>gb|ZP_00023463.1| hypothetical protein [Ralstonia metallidurans]
Length = 566
Score = 31.6 bits (70), Expect = 4.9
Identities = 14/41 (34%), Positives = 23/41 (55%)
Frame = +2
Query: 41 IRSIRWKTIVHYMLVSISLHQPTMSKVKKTLGSTHIRINRN 163
+R + +T H MLV + + T + +K LG HI +N+N
Sbjct: 456 LRIVSGRTESHVMLVDLRAKKITGKEAEKILGDAHITVNKN 496
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,534,691
Number of Sequences: 1393205
Number of extensions: 9341982
Number of successful extensions: 20778
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20772
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
